Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j21
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    24   3.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   7.2  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    23   7.2  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    23   7.2  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    23   7.2  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    22   9.5  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    22   9.5  

>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 65  YKICCMKKRFTTVLFMY 115
           +K CC+ ++ T  LF+Y
Sbjct: 2   WKFCCVTEKLTLFLFIY 18


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 8   VFIEFEGRVYAQTTRLTIRYKICCMKKRFTTVLFMYVPTCKL 133
           +F+    RV++  +RL   + +C  KKR   + F +    K+
Sbjct: 182 LFLPLLLRVFSTLSRLPRLFCLCLQKKRRVLIPFAFTSFRKI 223


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 71  ICCMKKRFTTVLFMYVP 121
           + C+KKR    LF+Y P
Sbjct: 180 LACVKKRRVADLFLYCP 196


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 111 INKTVVNRFFMQHIL*RIVSRV 46
           I  + +NRFF+Q I+ RI+  V
Sbjct: 278 IPSSSINRFFVQGIVKRIIPAV 299


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 146 LYSIILQNKCACE 184
           +Y I++ NKC CE
Sbjct: 115 VYKILIGNKCDCE 127


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
 Frame = +2

Query: 62  RYKICCMKKRFT-------TVLFMYVPTCKL 133
           RY + CM   ++       T+LF Y+P C L
Sbjct: 137 RYVVICMNGCYSSFYQTWYTLLFFYIPPCLL 167


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 87  NGLLLFCLCTYLHANL 134
           N  LL CLC Y +AN+
Sbjct: 155 NPKLLDCLCLYGYANI 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 766,411
Number of Sequences: 5004
Number of extensions: 11969
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)