Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j18
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    29   0.055
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    28   0.096
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    28   0.096
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    26   0.29 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    25   0.89 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   3.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.8  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   6.3  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 28.7 bits (61), Expect = 0.055
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 471 TGQALRGLKMEFDHDGKITCLTHRRRRHEVDVITGTSDGELFIWSLNNKGLIAKFSAHPS 650
           +G+ L  LK EF  +  +T     RRR ++    G ++ ++ IW  N +  I K S   +
Sbjct: 28  SGEQLARLKREFAENRYLT----ERRRQQLSRDLGLNEAQIKIWFQNKRAKIKKASGQKN 83

Query: 651 EI 656
            +
Sbjct: 84  PL 85


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 0.096
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 429 GCDGVVRVWGNIGKTGQALRGLKMEFDHDGKITC 530
           GCD V  V+G+I   GQA+    + FD    I+C
Sbjct: 128 GCD-VYSVFGSISGMGQAMTNAAIAFDRYRTISC 160


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 0.096
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 429 GCDGVVRVWGNIGKTGQALRGLKMEFDHDGKITC 530
           GCD V  V+G+I   GQA+    + FD    I+C
Sbjct: 128 GCD-VYSVFGSISGMGQAMTNAAIAFDRYRTISC 160


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +3

Query: 471 TGQALRGLKMEFDHDGKITCLTHRRRRHEVDVITGTSDGELFIWSLNNKGLIAKFSAHPS 650
           + + L  LK EF  +  +T     RRR ++    G ++ ++ IW  N +  I K S   +
Sbjct: 28  SAEQLARLKREFAENRYLT----ERRRQQLSRDLGLTEAQIKIWFQNKRAKIKKASGQKN 83

Query: 651 EI 656
            +
Sbjct: 84  PL 85


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 51  PQIAKPMCCEMNRSYRIECIDVIRLHKESVTCV 149
           P +  P  C+M+ S  + C D  RL+K +V  V
Sbjct: 51  PNVINPFFCDMSPSLSLLCADT-RLNKLAVFIV 82


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 527 GYLSVVIEFHFETPECLSSLS 465
           G+LS ++EF  E  + LSS++
Sbjct: 865 GHLSTLVEFALELKKALSSIN 885


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 368 SSKTFHNSTVLHVI*VYFIVPR 303
           SSKT  N+TVLH I    I P+
Sbjct: 223 SSKTETNATVLHSINKVIIHPK 244


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 533 QTGYLSVVIEFHFETPECLSSLSNV 459
           +T Y  VV+    ++ EC  +L N+
Sbjct: 184 ETSYFKVVVVEDVDSVECCGALKNI 208


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 644 VSRELGNQTFIIQTPYEK 591
           V RELGN T I+   + K
Sbjct: 498 VKRELGNDTVIVMMNFSK 515


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = -1

Query: 554  VSTSSVSQTGYLSVVIEFHFETPECLSSLSNVTPHTDN 441
            VSTS+  QT  LS     H       SS SNVT  T N
Sbjct: 925  VSTSAGLQTIRLSGHSVLHSAQSVVASSASNVTNVTTN 962


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 249 PTPLSCCVMVDNNVVAV 299
           P P SCC   +NN  ++
Sbjct: 158 PIPASCCNSPENNTCSI 174


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 461 HWKDWTSTPGSQNGIRSRRKDNL 529
           HW    +T G +  IR +RK  L
Sbjct: 7   HWHKRRATGGKRKPIRKKRKFEL 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,673
Number of Sequences: 438
Number of extensions: 5051
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)