Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j14
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20861-13|ABD63242.1|  112|Caenorhabditis elegans Hypothetical p...    63   2e-10
U20861-12|AAA62299.1|  403|Caenorhabditis elegans Hypothetical p...    63   2e-10
U23529-5|AAL32212.2|  385|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z75543-11|CAA99876.1|  277|Caenorhabditis elegans Hypothetical p...    30   1.3  
AY728064-1|AAU43725.1|  277|Caenorhabditis elegans cadmium-induc...    30   1.3  
U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF022976-13|AAC69078.1|  282|Caenorhabditis elegans Hypothetical...    29   3.1  
AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    28   5.4  
U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell l...    27   7.2  
AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain p...    27   7.2  
Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protei...    27   9.5  

>U20861-13|ABD63242.1|  112|Caenorhabditis elegans Hypothetical
           protein C28H8.11c protein.
          Length = 112

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 33/65 (50%), Positives = 42/65 (64%)
 Frame = +1

Query: 364 NHVIMVQRMIXXXXXXXXXXXXXXXXRSTLSDRYKVFLDLFNLSTFLLPRALIPPLDEDM 543
           NHV++VQRM+                RST+SDRYKVFLDLFNLST+L+PR  IP L   M
Sbjct: 35  NHVLLVQRMLGAKQGTGGSSGYMYL-RSTVSDRYKVFLDLFNLSTWLIPREYIPMLSPRM 93

Query: 544 KRSLN 558
            ++L+
Sbjct: 94  VKTLS 98


>U20861-12|AAA62299.1|  403|Caenorhabditis elegans Hypothetical
           protein C28H8.11a protein.
          Length = 403

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 33/65 (50%), Positives = 42/65 (64%)
 Frame = +1

Query: 364 NHVIMVQRMIXXXXXXXXXXXXXXXXRSTLSDRYKVFLDLFNLSTFLLPRALIPPLDEDM 543
           NHV++VQRM+                RST+SDRYKVFLDLFNLST+L+PR  IP L   M
Sbjct: 326 NHVLLVQRMLGAKQGTGGSSGYMYL-RSTVSDRYKVFLDLFNLSTWLIPREYIPMLSPRM 384

Query: 544 KRSLN 558
            ++L+
Sbjct: 385 VKTLS 389


>U23529-5|AAL32212.2|  385|Caenorhabditis elegans Hypothetical
           protein C15B12.8 protein.
          Length = 385

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 197 VVDYLHPYAFTPCKYCNSSHNYKY*WSLSSRNSTIIV 87
           V+D   PY    CKY NS  ++     +SS NS I+V
Sbjct: 305 VIDGSSPYKVDQCKYTNSPDHHYLIGPVSSENSKILV 341


>Z75543-11|CAA99876.1|  277|Caenorhabditis elegans Hypothetical
           protein K01D12.11 protein.
          Length = 277

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 442 RSTLSDRYKVFLDLFNLSTFLLPRALIPPLDEDMKRSL 555
           +S     Y +F DLFNL +FL+P  +IP +    KR +
Sbjct: 149 KSASDSLYNIFGDLFNLPSFLVP-VVIPVVRAFFKRKI 185


>AY728064-1|AAU43725.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-4 protein.
          Length = 277

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 442 RSTLSDRYKVFLDLFNLSTFLLPRALIPPLDEDMKRSL 555
           +S     Y +F DLFNL +FL+P  +IP +    KR +
Sbjct: 149 KSASDSLYNIFGDLFNLPSFLVP-VVIPVVRAFFKRKI 185


>U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical
           protein F55A4.1 protein.
          Length = 214

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +3

Query: 48  TNQPIKIFKLKISNNYSRISTTEGPLVF--VIVRAVAIFTWRKSVWMQVINHYRSSEVAE 221
           +NQ   +FK K++   ++ S   GP VF  +IV+ +         + + +     S++ +
Sbjct: 35  SNQAKMLFK-KLNGAPAQQSVESGPFVFHYIIVQNICALVLCDRNFPRKVAFQYLSDIGQ 93

Query: 222 KYLNQKLSRIPYIFKAFY 275
           ++LN+  SRI  + + ++
Sbjct: 94  EFLNENSSRIEQVVRPYH 111


>AF022976-13|AAC69078.1|  282|Caenorhabditis elegans Hypothetical
           protein R11G11.3 protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 69  FKLKISNNYSRISTTEGPLVFVIVRAVAIFTWRKSVWMQVINHYRSS-EVAEKYLNQKLS 245
           F+L   + +S+I      L F  VR+  +  +R  +     N Y SS E  E +L +   
Sbjct: 146 FRLPYLHTHSKIDVATR-LKFKPVRS-KLHNFRFKLQRPAENDYESSKEYHEPFLKRPPD 203

Query: 246 RIPYIFKAFYT 278
           RIPY+F A  T
Sbjct: 204 RIPYLFNASST 214


>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 398 DPIILCTIITWLSFSKTGIAEMRTFKDF 315
           D  +L TI +++S SKTG+ E+  FK++
Sbjct: 167 DIALLLTISSFISHSKTGLEEIEGFKNW 194


>U61952-7|AAB03164.1| 1042|Caenorhabditis elegans Abnormal cell
            lineage protein 49 protein.
          Length = 1042

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = +3

Query: 48   TNQPIKIFKLKISNNYSRISTTEGPLVFVIVRAVAIFTWRKSVWMQVINHYRSSEVAEKY 227
            T Q ++  KLK + N +        LV V  RA  +   R +     I+H +   + +K 
Sbjct: 914  TTQELEAEKLKSAENEAMSKFAHNQLVIVDGRAAKVIESRLAHLASDIHHEQRQSMMKK- 972

Query: 228  LNQKLSRIPYIFKAFYTIYRASN 296
              + LS IP     +   ++ SN
Sbjct: 973  RREVLSEIPQAAVIYVEFFQKSN 995


>AF163018-1|AAD49323.1| 1042|Caenorhabditis elegans bromodomain
            protein LIN-49 protein.
          Length = 1042

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = +3

Query: 48   TNQPIKIFKLKISNNYSRISTTEGPLVFVIVRAVAIFTWRKSVWMQVINHYRSSEVAEKY 227
            T Q ++  KLK + N +        LV V  RA  +   R +     I+H +   + +K 
Sbjct: 914  TTQELEAEKLKSAENEAMSKFAHNQLVIVDGRAAKVIESRLAHLASDIHHEQRQSMMKK- 972

Query: 228  LNQKLSRIPYIFKAFYTIYRASN 296
              + LS IP     +   ++ SN
Sbjct: 973  RREVLSEIPQAAVIYVEFFQKSN 995


>Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical
           protein C09H6.2b protein.
          Length = 954

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 190 ITCIHTLLRHVNIATALTITNTSGPSVVEIRL 95
           ++   T ++++  ATA+ +T  S P VVE+R+
Sbjct: 836 LSAAQTQIKNMKTATAVRMTVVSTPPVVEVRI 867


>Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical
           protein C09H6.2a protein.
          Length = 982

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 190 ITCIHTLLRHVNIATALTITNTSGPSVVEIRL 95
           ++   T ++++  ATA+ +T  S P VVE+R+
Sbjct: 864 LSAAQTQIKNMKTATAVRMTVVSTPPVVEVRI 895


>AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protein
           protein.
          Length = 954

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 190 ITCIHTLLRHVNIATALTITNTSGPSVVEIRL 95
           ++   T ++++  ATA+ +T  S P VVE+R+
Sbjct: 836 LSAAQTQIKNMKTATAVRMTVVSTPPVVEVRI 867


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,141,277
Number of Sequences: 27780
Number of extensions: 265678
Number of successful extensions: 602
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)