Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12j13
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 97 5e-21
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 55 2e-08
12_02_0172 - 14891923-14892102,14892894-14892980 28 2.8
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 28 2.8
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 28 2.8
12_01_0152 - 1168928-1169377 28 3.7
11_01_0155 - 1287003-1287452 28 3.7
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 27 4.9
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 27 6.4
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 27 6.4
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 8.5
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 27 8.5
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 97.1 bits (231), Expect = 5e-21
Identities = 60/141 (42%), Positives = 76/141 (53%), Gaps = 18/141 (12%)
Frame = +2
Query: 41 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 220
M ++K ELR K+ + LRVAKVTGG +KLSKI+VVR +IARV V
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 221 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKH------------------EAKI 346
QK + LR YK K PLDLR KKTRA+R+ LTKH + +
Sbjct: 61 ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSL 120
Query: 347 KTRKEIXKKSLFPPRVYAVKA 409
KT +E ++ FP R YA+KA
Sbjct: 121 KTEREKKREKYFPMRKYAIKA 141
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 55.2 bits (127), Expect = 2e-08
Identities = 39/106 (36%), Positives = 52/106 (49%)
Frame = +2
Query: 29 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 208
VTV M ++K LR ++ + LRVA+VTGG +KLS I+ VR A+
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162
Query: 209 VYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKI 346
Y K K PLDLR KKT A+R+ LTKH+ +
Sbjct: 163 AY-------------KKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195
>12_02_0172 - 14891923-14892102,14892894-14892980
Length = 88
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 137 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 310
+A + GV K+S A R +V H+ +++ RNH ++KY+ L +
Sbjct: 1 MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRS-SLLGETPGR 59
Query: 311 MRKALTK 331
R+A TK
Sbjct: 60 SRRAKTK 66
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 269 KYKPLDLRAKKTRAMRKALTKHEAK-IKTRKEIXKK 373
KY+P D AKK R +++A + E K ++ +K I K
Sbjct: 94 KYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVK 129
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 269 KYKPLDLRAKKTRAMRKALTKHEAK-IKTRKEIXKK 373
KY+P D AKK R +++A + E K ++ +K I K
Sbjct: 78 KYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVK 113
>12_01_0152 - 1168928-1169377
Length = 149
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 143 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 232
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 143 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 232
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 224 HQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 361
H K + ++ NK+ L L+ K+ + + L + E KI R+E
Sbjct: 270 HTKATLKIKEDDINKRLAELHLQEKEAESKNRKLEEREKKIAEREE 315
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 170 LSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDL 289
+SK ++K + R + HQ +K +L K +Y PLDL
Sbjct: 610 ISKENSIKKQVTRYKM--HQHLKFHLGEISKTSEYDPLDL 647
>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 248 RNHYKN--KKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIXKKSLFPPRVYAVK 406
RNH N K PL + +K M+K++ + T E K +FPP Y K
Sbjct: 1048 RNHINNLAKLAGPLYAKLRKN-GMKKSMNYSGVEFFTFGEDNKLKVFPPNTYKFK 1101
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 235 HLLVIHNVNTCDSFSYNTDLG 173
H +HN N CDS Y D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 26.6 bits (56), Expect = 8.5
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 239 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIXKKSLFPPRVYAVKA 409
+ L NH+ N+K K + + KK +KA+ K +TR+E+ +K P + Y +A
Sbjct: 230 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKD--PAKKYPHRA 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,199,509
Number of Sequences: 37544
Number of extensions: 116521
Number of successful extensions: 310
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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