Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j09
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1089 + 10004773-10004831,10004924-10005033,10005631-100057...   209   1e-54
07_01_1096 - 10063016-10063117,10063530-10063580,10063924-100640...   169   2e-42
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034...    28   5.5  
12_01_0411 + 3276679-3276687,3277430-3277493,3278256-3278297,327...    28   7.2  
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957...    27   9.6  

>07_01_1089 +
           10004773-10004831,10004924-10005033,10005631-10005749,
           10005833-10005930,10006834-10006921,10006993-10007127,
           10007211-10007313,10007506-10007618,10007821-10007868
          Length = 290

 Score =  209 bits (511), Expect = 1e-54
 Identities = 99/186 (53%), Positives = 125/186 (67%)
 Frame = +1

Query: 85  DDVVWAIINKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGIIYLY 264
           DDV+W  I   HCS      T  FCRN YN TG+C+RSSCPLANS+YATIR+ +GI YLY
Sbjct: 3   DDVIWHCIRHNHCSFMAKITTGIFCRNPYNATGICNRSSCPLANSRYATIRDHDGIFYLY 62

Query: 265 MKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMR 444
           MKTAER   P K WE+VKL RN+EKA+  IN++L +WP  +  K KQR  K+TQY IRMR
Sbjct: 63  MKTAERAHLPNKLWERVKLPRNYEKAMEVINKHLEFWPKLLVHKIKQRLTKMTQYRIRMR 122

Query: 445 KLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYNDIYNFPQM 624
           KL+L+  ++++ + RK          KA  AA+++  IE +L ERLKKG Y DIYN+P  
Sbjct: 123 KLQLKVREKVMTMPRKETQRHLRRMDKAEKAAQLEKNIESELKERLKKGVYGDIYNYPFK 182

Query: 625 AFDAAL 642
            FD  L
Sbjct: 183 EFDTIL 188


>07_01_1096 -
           10063016-10063117,10063530-10063580,10063924-10064033,
           10064367-10064454,10064543-10064603,10065198-10065295,
           10065394-10065512,10066593-10066702,10066801-10066859
          Length = 265

 Score =  169 bits (410), Expect = 2e-42
 Identities = 76/125 (60%), Positives = 90/125 (72%)
 Frame = +1

Query: 85  DDVVWAIINKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGIIYLY 264
           DDV+W  I   HCS      T  FCRN YN TG+C+RSSCPLANS+YATIR+ +GI YLY
Sbjct: 3   DDVIWHCIRHNHCSFMAKITTGIFCRNPYNATGICNRSSCPLANSRYATIRDHDGIFYLY 62

Query: 265 MKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMR 444
           MKTAER   P K WE+VKL RN+EKAI  IN +L +WP  +  K KQR  K+TQY IRMR
Sbjct: 63  MKTAERAHHPNKLWERVKLPRNYEKAIEVINRHLEFWPKLLVHKIKQRLTKMTQYRIRMR 122

Query: 445 KLKLR 459
           KL+L+
Sbjct: 123 KLRLK 127


>02_02_0528 +
           11199799-11200470,11201850-11201951,11202858-11203487,
           11204287-11204547
          Length = 554

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 297 CWEHYSLSCLHIQINNAIFFSYCGIFAVGK 208
           CW+  S  CLH+   + I    CG F  GK
Sbjct: 301 CWDVESGKCLHVYEKSGIGLISCGWFPDGK 330


>12_01_0411 +
           3276679-3276687,3277430-3277493,3278256-3278297,
           3279047-3279063,3280011-3281258
          Length = 459

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 598 CKCLFLISLTIVFLLHYLFWQQLKPSLLFFSPVF 497
           CK    +  + +F+  +L W +LKPS L  +P F
Sbjct: 108 CKAWHAMISSPIFINAHLEWSKLKPSSLLMAPGF 141


>03_03_0105 +
           14491198-14493636,14494793-14494957,14495647-14495760,
           14496223-14496487,14497164-14497237,14497851-14497928
          Length = 1044

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 255 LFVYEDS*ENNVPSKTMGESETV 323
           L+VYEDS E +    T+GE E+V
Sbjct: 362 LWVYEDSPEGSAQVSTLGEGESV 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,055,944
Number of Sequences: 37544
Number of extensions: 280145
Number of successful extensions: 686
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)