Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j07
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    30   0.19 
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    26   3.1  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   5.4  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    25   9.5  

>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 358 ALFHKLCSHFDDHFALLTCSLHSSYDKTQIPPSCQHKLWVQLSYLINNS 504
           ALF  LC +       LT  +H        P S Q  LW  + + +NNS
Sbjct: 154 ALFKYLCDYLRSGEFPLTVLIHHVMLYQYYPKSLQEALWAAVEHYVNNS 202


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 397 FALLTCSLHSSYDKTQIPPSCQHKLWVQLSYLINNSFLF 513
           F  L+CS       TQ+P  C   L VQ SY + N  +F
Sbjct: 219 FDKLSCSSPEMVATTQLPSQCIPHL-VQKSYYLQNRHVF 256


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 343 DAGECALFHKLCSHFDDHFAL--LTCSLHSSYDKTQIPPSCQHKLWVQLSYLINNS 504
           D G      ++CS    H+A+  ++C  HS   ++ +    QH L    +YL+NNS
Sbjct: 4   DIGSAVAELQVCS---THYAMTIVSCGFHSP--QSLMNADLQHCLLADQNYLLNNS 54


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 312 IIRFSAMHIFQNS*TCRYYPNCREDFS*HC 223
           +  +  +H+F +S +  Y+PN R  +S  C
Sbjct: 37  LYHYEHIHLFTSSQSYMYHPNARFSYSPFC 66


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 364 FHKLCSHFDDHFALLTCSLHSSYDKTQIPPSCQHKLWVQLSYL 492
           FH+L  H    +  +T    SS   T +PP     L V  + L
Sbjct: 69  FHQLQQHVQTPYGGMTMPASSSSGATSVPPEQDPSLSVSFNRL 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,220
Number of Sequences: 5004
Number of extensions: 38295
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)