Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12j07
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0619 - 35136435-35136728,35137155-35137358,35137476-351376... 32 0.34
03_06_0750 - 35979783-35980061 28 4.1
12_02_0656 + 21601782-21601925,21602249-21602460,21602686-216028... 28 5.5
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187... 28 5.5
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91... 27 7.2
03_05_0714 - 27076881-27077218,27077332-27077482,27077768-270779... 27 7.2
06_03_0352 - 19802826-19803148,19803232-19803457,19803549-19803932 27 9.6
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 27 9.6
>03_06_0619 -
35136435-35136728,35137155-35137358,35137476-35137646,
35137902-35138050,35138380-35138527,35138614-35138682,
35138767-35139027,35139223-35139417,35139772-35139888,
35140026-35140961
Length = 847
Score = 31.9 bits (69), Expect = 0.34
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Frame = +1
Query: 235 KVFTTVWVITACLGVLKNVHCRKSDDNSYKNYLF-SWDAGECALFHKLCSHFDDHFAL-- 405
K+ W++T C + D ++ +F S D+G F K+ + +
Sbjct: 472 KINRMSWIVTPAADEANAHVCEEKDPENWHVQVFRSIDSGSVKGFPKIVQEAESQNLVCA 531
Query: 406 ----LTCSLHSSYDKTQIPPSCQHKLWVQLSYLINNSFLFHTLK 525
+ S+HS+Y K S QH ++++ Y I +SFL+ + K
Sbjct: 532 KNLKIDKSIHSAYVKAI--RSAQHFIYIENQYFIGSSFLWSSHK 573
>03_06_0750 - 35979783-35980061
Length = 92
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 295 CRKSDDNSYKNYLFSWDAGECALFHKLCSHFDDHFALLTCSLHSSYD 435
CR+ DD L D A F+ C D A T H SYD
Sbjct: 42 CRRHDDQKRYYQLRDGDPPYAAKFYDCCGAEDPDAAGCTTDFHLSYD 88
>12_02_0656 +
21601782-21601925,21602249-21602460,21602686-21602813,
21602905-21602986,21603308-21603406,21603619-21604054,
21604280-21604350,21604438-21604523,21604740-21604750
Length = 422
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 330 IVFVGVIIRFSAMHI-FQNS*TCRYYPN 250
I+FVG+ ++F + Q S CR+YPN
Sbjct: 150 ILFVGLTVKFRDHQLALQGSTVCRWYPN 177
>07_03_0244 -
15715047-15715163,15716672-15716824,15718629-15718748,
15718830-15719045,15719902-15719968,15720051-15720125,
15720607-15720698,15721053-15721154,15721642-15721711,
15721788-15721846,15721947-15722031,15722443-15722520,
15722627-15722725,15722819-15722910,15725572-15725661,
15725937-15725995,15727966-15728281,15728627-15728702,
15729998-15730308,15730577-15730634,15731082-15731092,
15731247-15731397,15733372-15733778
Length = 967
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 307 DDNSYKNYLFSWDAGECALFHKLCSHFDDHFALLTCS 417
D+ Y N WDA A + SH F+L+ C+
Sbjct: 152 DEGCYSNLEDEWDAWASAQLASIGSHVHGKFSLMQCN 188
>05_01_0135 +
908803-909059,913133-913187,913499-914047,914140-914365,
914446-914906
Length = 515
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 358 ALFHKLCSHFDDHFALLTCSLHSSYDK 438
A+FHKLC HF LL +LH + ++
Sbjct: 191 AIFHKLCGHFRSR-GLLVDTLHVTVEE 216
>03_05_0714 -
27076881-27077218,27077332-27077482,27077768-27077903,
27078309-27078457,27079141-27079267,27080033-27080172,
27080264-27080329,27080760-27080901,27081021-27081115,
27081640-27082140
Length = 614
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +1
Query: 142 EKCKMFFVNFNEPKD*LXLXKLNXGVSTMSTKVFTTVWVITACLGVLKNVHCRKSDDNSY 321
E CK++ ++ EP+ L + L V + V + C+G++ N+ C KS N+
Sbjct: 229 EGCKLWDLSVIEPQAELMVNNLVLEVLLANLHVRQFLRAKEICIGIIGNLACHKSLANAI 288
Query: 322 KNY 330
++
Sbjct: 289 TSH 291
>06_03_0352 - 19802826-19803148,19803232-19803457,19803549-19803932
Length = 310
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 358 ALFHKLCSHFDDHFALLTCSLHSSYDK 438
A+FHKLC HF LL +LH + ++
Sbjct: 32 AIFHKLCGHFISR-GLLVDTLHVTIEE 57
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 330 IVFVGVIIRFSAMHI-FQNS*TCRYYPN 250
++FVG+ ++F + Q S CR+YPN
Sbjct: 153 MLFVGLTVKFRDRQLALQGSTVCRWYPN 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,773,912
Number of Sequences: 37544
Number of extensions: 208298
Number of successful extensions: 404
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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