Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j07
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81147-6|CAB03535.1|  506|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.           29   2.8  
U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein rec...    29   2.8  
AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor...    29   2.8  
AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor medi...    29   2.8  
Z99281-26|CAE18029.1|  377|Caenorhabditis elegans Hypothetical p...    28   3.7  
Z72511-6|CAA96659.2|  391|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81147-6|CAB03535.1|  506|Caenorhabditis elegans Hypothetical
           protein T09E11.8 protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 412 CSLHSSYDKTQIPPSCQHKLWVQLSYLINNSFLFHTLKD 528
           CS+ + +    +PP   H+L++ LS   NN +    +KD
Sbjct: 92  CSMATRFGSVSLPPHSPHQLYINLSTEGNNEYTVVPVKD 130


>U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 343 DAGECALFHKLCSHF-DDHFALLTCSLHSSYDKTQIPPSCQHK 468
           D  ECA    LC HF +D      C   + Y+      SC+++
Sbjct: 339 DEDECATHGHLCQHFCEDRLGSFACKCANGYELETDGHSCKYE 381


>U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein
           receptor precursor protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 343 DAGECALFHKLCSHF-DDHFALLTCSLHSSYDKTQIPPSCQHK 468
           D  ECA    LC HF +D      C   + Y+      SC+++
Sbjct: 339 DEDECATHGHLCQHFCEDRLGSFACKCANGYELETDGHSCKYE 381


>AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor
           RME-2 protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 343 DAGECALFHKLCSHF-DDHFALLTCSLHSSYDKTQIPPSCQHK 468
           D  ECA    LC HF +D      C   + Y+      SC+++
Sbjct: 339 DEDECATHGHLCQHFCEDRLGSFACKCANGYELETDGHSCKYE 381


>AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor
           mediated endocytosis protein2 protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 343 DAGECALFHKLCSHF-DDHFALLTCSLHSSYDKTQIPPSCQHK 468
           D  ECA    LC HF +D      C   + Y+      SC+++
Sbjct: 339 DEDECATHGHLCQHFCEDRLGSFACKCANGYELETDGHSCKYE 381


>Z99281-26|CAE18029.1|  377|Caenorhabditis elegans Hypothetical
           protein Y57G11C.46 protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 334 FSWDAGECALFHKLCSHFDDHFALLTCSLHSSYDKTQIPPSCQHKLWV 477
           FSW     +L   +C H+ D      C+ H  YD+ ++    +  +W+
Sbjct: 169 FSWSTVTVSLVFSICYHWSDFSKNRVCT-HCIYDQNRVLIPMELMIWL 215


>Z72511-6|CAA96659.2|  391|Caenorhabditis elegans Hypothetical
           protein F55A11.5 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 195 TQLIFWLIKVNKKHFAFFFRRHINKGLL*FFI 100
           T L+FW + ++   +  FF R +  G L FF+
Sbjct: 324 TSLMFWTLVISFCSYHIFFVRTLQLGFLYFFV 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,256,746
Number of Sequences: 27780
Number of extensions: 218202
Number of successful extensions: 455
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)