Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j06
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    26   4.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   6.0  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   6.0  

>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 307 FWHNYIKI*CMP*DADDAEGYWGSQLGKNVR 399
           FW +   + C+  D  D+E  W +   K VR
Sbjct: 218 FWGHQSNVYCLLFDPQDSEALWTASADKTVR 248


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 372 PVPLRIVRILRHTLNFYVIMPKYDVSAMYNF 280
           PV LRI RIL      YV     D+  +++F
Sbjct: 261 PVALRISRILNIIFQHYVTSLTLDIEVIFSF 291


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = -3

Query: 314 CQNMTYPRCTIFESSISQNNVTFFKYVLKLNQRLNLKNDLCK*HLDYHYPR*CNNVYFIK 135
           C N   P   IFE+   +   TF  Y+ KL +   L       HL YH  +  + + F+ 
Sbjct: 670 CVNPESPEHVIFEADAMELWSTFLMYIQKLPETFTLLIP----HLLYHLSQATSTLPFVL 725

Query: 134 HFTH*YKIFN 105
                Y++ +
Sbjct: 726 MIVSSYQLLD 735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,812
Number of Sequences: 5004
Number of extensions: 42054
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)