Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j06
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   3.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   8.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 219 LIQFEHIFKKSNIILRYRTLENCTSRI 299
           L+Q +HI K+ +   RY+ + +C  RI
Sbjct: 37  LLQVQHISKQISEEQRYKGMIDCFVRI 63


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 219 LIQFEHIFKKSNIILRYRTLENCTSRI 299
           L+Q +HI K+ +   RY+ + +C  RI
Sbjct: 37  LLQVQHISKQISEEQRYKGMIDCFVRI 63


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 377 PNWEKTSVT*DFYYLCLSMMAIQC 448
           P +   S +  FY  C+ M+ I C
Sbjct: 190 PTYAVVSSSISFYVPCIVMLGIYC 213


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 488 NHNNNCHHVDYTLDTV 441
           N+NNNC  + Y ++ +
Sbjct: 99  NYNNNCKKLYYNINYI 114


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 488 NHNNNCHHVDYTLDTV 441
           N+NNNC  + Y ++ +
Sbjct: 104 NYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 488 NHNNNCHHVDYTLDTV 441
           N+NNNC  + Y ++ +
Sbjct: 104 NYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 488 NHNNNCHHVDYTLDTV 441
           N+NNNC  + Y ++ +
Sbjct: 104 NYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 488 NHNNNCHHVDYTLDTV 441
           N+NNNC  + Y ++ +
Sbjct: 104 NYNNNCKKLYYNINYI 119


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 373 PSTPPHRPHPKAY 335
           PS  PH+ HP  Y
Sbjct: 314 PSYHPHQHHPSQY 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,583
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)