Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j05
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.41 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.71 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   3.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   3.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   6.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   6.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   6.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   6.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 432 CYTVNFSLRLRDFQFVSGIER 370
           CY V F+L LR    V GI+R
Sbjct: 705 CYLVTFALVLRPTDIVCGIQR 725


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 537 NFESDKVIESDNRSLQKLYKAIYDWHQYAKSCPQPCYTVNFSLR 406
           N+ ++    + N + +KLY  I +  Q     P P Y  NF  R
Sbjct: 337 NYNNNNYNNNYNNNCKKLYYNIINIEQIPVPVPVPIYCGNFPPR 380


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 273 FVSLVPVLAQAALAEPVPAGQSRRVYDGRQTDPTTAGLVRRF 148
           F  L+    + +    VP+ Q   V++      TT+GLVR F
Sbjct: 9   FFLLLSSCTRPSRGNAVPSSQRGNVHNDPLVVETTSGLVRGF 50


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 273 FVSLVPVLAQAALAEPVPAGQSRRVYDGRQTDPTTAGLVRRF 148
           F  L+    + +    VP+ Q   V++      TT+GLVR F
Sbjct: 9   FFLLLSSCTRPSRGNAVPSSQRGNVHNDPLVVETTSGLVRGF 50


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 459 QYAKSCPQPCYTVNFSLRLR 400
           +Y   CP+P   + + +RLR
Sbjct: 191 EYYSCCPEPYPDITYEIRLR 210


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 510 SDNRSLQKLYKAIYDWHQYAKSCPQPCYTVNFSLR 406
           ++N + +KLY  I +  Q     P P Y  NF  R
Sbjct: 315 NNNYNSKKLYYNIINIEQIPVPVPVPIYCGNFPPR 349


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 510 SDNRSLQKLYKAIYDWHQYAKSCPQPCYTVNFSLR 406
           ++N + +KLY  I +  Q     P P Y  NF  R
Sbjct: 326 NNNYNSKKLYYNIINIEQIPVPVPVPIYCGNFPPR 360


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 158 YDDLMLVLDP*LSCAIWFLANKLAFDSDIFLYYC 57
           +D+L+L  D  ++  +W   +  +F    F  YC
Sbjct: 398 FDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYC 431


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 510 SDNRSLQKLYKAIYDWHQYAKSCPQPCYTVNFSLR 406
           +DN   +KLY  I    Q     P P Y  NF  R
Sbjct: 98  NDNNYNKKLYYNINYIEQIPVPVPVPIYCGNFPPR 132


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 510 SDNRSLQKLYKAIYDWHQYAKSCPQPCYTVNFSLR 406
           ++N   +KLY  I +  Q     P P Y  NF  R
Sbjct: 104 NNNNYNKKLYYNIINIEQIPVPVPVPVYCGNFPPR 138


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 510 SDNRSLQKLYKAIYDWHQYAKSCPQPCYTVNFSLR 406
           ++N   +KLY  I +  Q     P P Y  NF  R
Sbjct: 104 NNNNYNKKLYYNIINIEQIPVPVPVPVYCGNFPPR 138


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 504 NRSLQKLYKAIYDWHQYAKSCPQPCYTVNFSLR 406
           N + +KLY  I    Q     P P Y  NF  R
Sbjct: 106 NNNCKKLYYNINYIEQIPVPVPVPIYCGNFPSR 138


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 223 HRFCERCLCQYWDERDKTDFIVCPLCRANTF 315
           HRF     CQ  ++RD++  ++     AN F
Sbjct: 72  HRFKSLPRCQLSNKRDRSRELIKAAILANDF 102


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 283 IVCPLCRANTFK 318
           I+C LC AN+ K
Sbjct: 212 IICALCLANSIK 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,854
Number of Sequences: 438
Number of extensions: 3240
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)