Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j04
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    29   2.1  
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638...    29   2.1  
08_02_0128 - 12848227-12848619,12848699-12848827,12849108-128492...    29   3.6  
06_02_0158 + 12410872-12411183,12413512-12413604,12413692-12413877     29   3.6  
08_02_1116 + 24400212-24400401,24402258-24402576,24403297-244034...    27   8.3  
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    27   8.3  

>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 165  LISPEKILLPPLHIKLGMMKEFVKALDKNNASFEYLCKKIPRLSDAKIKE 314
            ++   KI+      +   +K  V++L KNN+S EY      + SDA +K+
Sbjct: 1075 MLRSSKIMTAEAERENSNLKNLVESLSKNNSSLEYELTSARKGSDATMKK 1124


>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
            20063933-20064139,20064267-20064405,20065146-20065282,
            20065414-20065657,20065808-20065969,20066049-20066167,
            20066240-20066314,20066327-20066500,20066607-20066769,
            20067211-20067420,20067515-20067668,20067761-20067839,
            20067999-20068146,20068501-20068671,20068771-20069385
          Length = 1250

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 354  DEKFDVTMNNTESDAWLAFKDAVNNFLGNNKHPDYKNKVANLLDKYQK 497
            DE+  + ++ T+   WL  + A + ++  N   D+KN    L+ +YQ+
Sbjct: 865  DERCGMELDETDPAVWLKLEAATDEYIQKN-FQDFKNVCELLVPRYQE 911


>08_02_0128 -
           12848227-12848619,12848699-12848827,12849108-12849279,
           12849336-12849488,12850017-12850271,12850846-12851000,
           12853319-12853456,12853545-12853715,12853878-12854063,
           12854169-12854290,12855617-12855752,12856108-12856203,
           12856294-12856356,12856846-12856993,12857324-12857514,
           12857916-12857989,12858039-12858171,12858299-12858460,
           12861649-12861745,12861866-12861962,12863994-12864141
          Length = 1072

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 462 NKVANLLDKYQK--LGCNMSIKLHFLDSHVDFFPDNLGDY 575
           N +AN  DK +K  L   +S +LH+L     F P+ + +Y
Sbjct: 200 NLIANAADKLEKETLNTELSFRLHYLTIQFFFVPNFMEEY 239


>06_02_0158 + 12410872-12411183,12413512-12413604,12413692-12413877
          Length = 196

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 543 HVNLESGVLCSYYT 502
           H  L+SGVLCSYYT
Sbjct: 106 HKQLKSGVLCSYYT 119


>08_02_1116 +
           24400212-24400401,24402258-24402576,24403297-24403480,
           24403752-24403971,24404282-24404427,24404533-24404571,
           24404990-24405061
          Length = 389

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +3

Query: 411 KDAVNNFLGNNKHPDYKNKVANLLDKYQKLGC 506
           K   NN   + KHPD     A  LD Y   GC
Sbjct: 309 KGCTNNGTADMKHPDTGEYFAGHLDAYLPYGC 340


>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 195 PLHIKLGMMKEFVKALDKNNASFEYLCKKIPRLSD 299
           P + K GMM+  VKA++K  AS +     IP ++D
Sbjct: 741 PAYQKQGMMRRLVKAVEKVLASLQVENLVIPAVAD 775


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,622,859
Number of Sequences: 37544
Number of extensions: 262848
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)