Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j04
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64844-5|AAM45362.1|  368|Caenorhabditis elegans Hypothetical pr...    32   0.34 
U64844-4|AAB18307.1|  376|Caenorhabditis elegans Hypothetical pr...    31   0.46 
AF078157-5|AAN84817.1|  379|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm rec...    29   3.2  
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81132-10|CAB03433.1|  320|Caenorhabditis elegans Hypothetical p...    27   7.4  
AL110478-4|CAB54346.1|  546|Caenorhabditis elegans Hypothetical ...    27   7.4  
AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical ...    27   7.4  
U40160-1|AAA81155.3|  531|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U23139-12|AAU20847.1|  262|Caenorhabditis elegans Hypothetical p...    27   9.8  
AF016429-3|AAB65366.1|  383|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC090999-22|AAK26159.1|  481|Caenorhabditis elegans Hypothetical...    27   9.8  

>U64844-5|AAM45362.1|  368|Caenorhabditis elegans Hypothetical
           protein T22F3.2b protein.
          Length = 368

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 219 MKEFVKALDKNNASFEYLCKKIPRLSDAKIKEGVFDGPQIRSLMADEKFDVTMNNTE 389
           +KE ++AL   +  F Y C K  + SDA +K  +   PQI  LM   +F  ++ N+E
Sbjct: 224 IKELMQALFTESKIFGYNCSKCKKKSDAPVKPTLLRAPQI-LLMHISRF--SLKNSE 277


>U64844-4|AAB18307.1|  376|Caenorhabditis elegans Hypothetical
           protein T22F3.2a protein.
          Length = 376

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 219 MKEFVKALDKNNASFEYLCKKIPRLSDAKIKEGVFDGPQI 338
           +KE ++AL   +  F Y C K  + SDA +K  +   PQI
Sbjct: 224 IKELMQALFTESKIFGYNCSKCKKKSDAPVKPTLLRAPQI 263


>AF078157-5|AAN84817.1|  379|Caenorhabditis elegans Hypothetical
           protein F25E5.7 protein.
          Length = 379

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 357 EKFDVTMNNTESDAWLAFKDAVNNFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLD 536
           ++FD+ M+ ++ D    F+D V   +  N  PD  +    +L+  + L  N SI    + 
Sbjct: 128 DRFDIIMDRSKFDMTRKFQDLVRRVIVINGCPDVNSAKVLILELKKPLELNPSIWPVCIS 187

Query: 537 SHVDFFPDNLGDYS 578
           +    F D   D+S
Sbjct: 188 NDPQLF-DRSSDFS 200


>AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm
           receptor protein 41 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -3

Query: 146 FCSYFEIFTRIPLFLNVV 93
           F  +FE+FT++P+F+ +V
Sbjct: 4   FYDFFEVFTKVPIFITIV 21


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +3

Query: 372 TMNNTESDAWLAFKDAVNNFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDF 551
           +M N  S + + FK + +NF G+  + +Y NK  N  D+      N SI   FL+  +  
Sbjct: 650 SMQNLPSTSEMQFKSSDDNFDGSFSNFEYDNK-ENEHDE-----ANESIDFGFLNEELKM 703

Query: 552 FPDN 563
            PD+
Sbjct: 704 IPDD 707


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +3

Query: 372 TMNNTESDAWLAFKDAVNNFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDF 551
           +M N  S + + FK + +NF G+  + +Y NK  N  D+      N SI   FL+  +  
Sbjct: 650 SMQNLPSTSEMQFKSSDDNFDGSFSNFEYDNK-ENEHDE-----ANESIDFGFLNEELKM 703

Query: 552 FPDN 563
            PD+
Sbjct: 704 IPDD 707


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 78  RARDKHYVQK*WNPRKNLKVGTKNVIRKKL 167
           RAR+++ VQ+ W PR+   + T  V   KL
Sbjct: 104 RAREQYKVQRKWQPRRPAAIPTTTVKTPKL 133


>Z81132-10|CAB03433.1|  320|Caenorhabditis elegans Hypothetical
           protein T26E4.12 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 272 QVFKTSIVFIQCFNELFHHTEF-DMKRR**NLFRTN*FFSYNVFCSYFEIFTRIPLFLNV 96
           QVF  S +F+  F  +   T+  D K    + +  + FF ++  CS F     +P +LNV
Sbjct: 228 QVFLPSFIFLGVFVFVGMFTQLIDPKI---SQYLVSVFFMFSPICSPFSYILFVPHYLNV 284

Query: 95  VL 90
           +L
Sbjct: 285 IL 286


>AL110478-4|CAB54346.1|  546|Caenorhabditis elegans Hypothetical
           protein Y26D4A.10 protein.
          Length = 546

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 471 ANLLDKYQKLGCNMSIKLHFLDSHVDFFPDNLGDYSEE 584
           A++L+K  +   +   K+H  D H +F   N  DY  E
Sbjct: 491 ADILEKRARALEDQKCKIHPTDDHTNFSRSNFSDYPNE 528


>AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical
           protein F19B2.8 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 448 CLLFPRKLLTASLNASQASDSVLFIVTSNFSSAI 347
           CL+FP  +    +N  + S ++LF + SNF   +
Sbjct: 35  CLIFPCFVYLFKMNRERDSKTILFPILSNFYKVV 68


>U40160-1|AAA81155.3|  531|Caenorhabditis elegans Hypothetical
           protein C56E10.3 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 234 KALDKNNASFEYLCKKIPRLSDAKIKEGVFDGPQIRSLMADEKFDVTMNNTESDAWLAF 410
           K LDK    +E LCKK  +L   K +  V +  Q+ +  +DE  D +    E +A  +F
Sbjct: 43  KQLDKKCGEYEQLCKKTAKLKAEKSRLDV-ESTQL-TAQSDE-IDQSFTKVEQNAEASF 98


>U23139-12|AAU20847.1|  262|Caenorhabditis elegans Hypothetical
           protein F13H8.1b protein.
          Length = 262

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 339 RSLMADEKFDVTMNNTESDAWLAFK 413
           R+L+AD+K    +   E DAWL F+
Sbjct: 208 RNLLADKKSKEAIRRIEHDAWLDFE 232


>AF016429-3|AAB65366.1|  383|Caenorhabditis elegans Hypothetical
           protein T21H3.5 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 356 ISHQRSDLRSIEHSFFNFCIR*SWNFFTQVFKTSIVFIQCFNELFHHTEFDMK 198
           +SH+   ++   H F  F +   W+F   VF  +I +I CF       +F MK
Sbjct: 175 VSHRDVVMKLSGHDFSYFVV--DWSFSLLVFTFTIPYITCFIVSLVFHKFYMK 225


>AC090999-22|AAK26159.1|  481|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.17a protein.
          Length = 481

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
 Frame = +3

Query: 411 KDAVNNFLGNNKHPDYKNKVANLLDKY---------QKLGCNMSIKLHFLDSHVDF 551
           K  + NF      P    +V N ++++         +K+ C M++KL + D H DF
Sbjct: 116 KQILGNFWKTYSEPRIAEEVLNTIERFCVITMGRYVRKILCYMNVKLDWFDFHFDF 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,611
Number of Sequences: 27780
Number of extensions: 274747
Number of successful extensions: 782
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)