Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12j02
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeas...    31   0.67 
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    31   0.67 
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    31   0.67 
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform b
           protein.
          Length = 681

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -3

Query: 307 VLREQRNRQAVVDYCQSTKEAELDSVPIVHMVAVIPFYF 191
           ++RE RN + V+DYC+   + +L  + ++ +VA  P +F
Sbjct: 579 MVREYRNMEKVIDYCKDQNDPDL-WIHLLGVVAEFPAHF 616


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -3

Query: 307 VLREQRNRQAVVDYCQSTKEAELDSVPIVHMVAVIPFYF 191
           ++RE RN + V+DYC+   + +L  + ++ +VA  P +F
Sbjct: 579 MVREYRNMEKVIDYCKDQNDPDL-WIHLLGVVAEFPAHF 616


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -3

Query: 307 VLREQRNRQAVVDYCQSTKEAELDSVPIVHMVAVIPFYF 191
           ++RE RN + V+DYC+   + +L  + ++ +VA  P +F
Sbjct: 627 MVREYRNMEKVIDYCKDQNDPDL-WIHLLGVVAEFPAHF 664


>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 471 ESCRYNVCSVIWNIVH 424
           + C+  +C+VIW ++H
Sbjct: 609 DECKLKICNVIWELIH 624


>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 471 ESCRYNVCSVIWNIVH 424
           + C+  +C+VIW ++H
Sbjct: 609 DECKLKICNVIWELIH 624


>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 471 ESCRYNVCSVIWNIVH 424
           + C+  +C+VIW ++H
Sbjct: 609 DECKLKICNVIWELIH 624


>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 471 ESCRYNVCSVIWNIVH 424
           + C+  +C+VIW ++H
Sbjct: 609 DECKLKICNVIWELIH 624


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,298,711
Number of Sequences: 27780
Number of extensions: 220557
Number of successful extensions: 563
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)