Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12i24
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 76 5e-15
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 73 5e-14
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 57 2e-09
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 56 3e-09
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 36 0.005
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 35 0.011
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 32 0.060
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 3.0
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 3.9
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 75.8 bits (178), Expect = 5e-15
Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Frame = -2
Query: 591 LTRQLLIGYRVYL*N--LSSIF-RTDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLV 421
L R LL R+ L + +S+ TD +QQTIR+ F T+LT+AHR+NT+MDSDR+LV
Sbjct: 1373 LARVLLTSTRILLLDEATASVHAETDAIVQQTIRKRFKDRTILTVAHRINTVMDSDRILV 1432
Query: 420 MSTGEVAEFDHPYILMSDPNSHLSSMVRETG 328
+ G+V EFD L+ + +S S+ +E+G
Sbjct: 1433 LDHGKVVEFDATKKLLENKDSMFYSLAKESG 1463
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 72.5 bits (170), Expect = 5e-14
Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Frame = -2
Query: 633 EATANVDP-Q*VLYQLTRQLLIGYRVYL*NLSSI---FRTDNFIQQTIRRAFASCTVLTI 466
E AN+ Q L LTR LL RV L + ++ TD +Q+TIR F T+LTI
Sbjct: 1356 EGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAVDVETDAIVQRTIRERFNDRTILTI 1415
Query: 465 AHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLSSMVRETG 328
AHR+NT+MDS+R+LV+ G+V EFD L+ + S S+ +E+G
Sbjct: 1416 AHRINTVMDSNRILVLDHGKVVEFDSTKKLLENKASLFYSLAKESG 1461
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 56.8 bits (131), Expect = 2e-09
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = -2
Query: 525 DNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLSS 346
D IQ+T+R AF T+L IAHRL TI+D D+V+V+ G + E+ P +L + N H
Sbjct: 1391 DQKIQKTLREAFGDATMLCIAHRLKTIVDYDKVMVLDKGVLVEYGPPAVLYHN-NGHFRR 1449
Query: 345 MVRETG 328
M +G
Sbjct: 1450 MCDGSG 1455
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 56.4 bits (130), Expect = 3e-09
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = -2
Query: 528 TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHP 385
TD IQQ +R AF TVL IAHR+ TI+D D+VLV+ +G+ EF P
Sbjct: 1359 TDRRIQQMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFGSP 1406
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 528 TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 397
++ +Q+ + A T + IAHRL++I D+D + V G +AE
Sbjct: 1293 SEKVVQEALNAASQGRTTVAIAHRLSSIQDADCIFVFDGGVIAE 1336
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 34.7 bits (76), Expect = 0.011
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = -2
Query: 486 SCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLSSMVR 337
S T +TIAH+L TI +D+++V+ G+V E + +S P ++ ++R
Sbjct: 670 SMTTITIAHKLATIRRADQIIVVGDGKVLE-QGSFERLSRPGTNFYKLMR 718
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 32.3 bits (70), Expect = 0.060
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = -2
Query: 516 IQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 397
+++TI+ SCTVL I H+ + + +DR++VM +G V E
Sbjct: 1274 LEKTIQNL--SCTVLIITHQPSLMKLADRIIVMDSGIVKE 1311
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 528 TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 397
T N + IR T L I H ++ I + + VLV+ G + +
Sbjct: 605 TKNLVMDAIRAHRKGKTTLVITHDMSQINNDELVLVIDKGHLIQ 648
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 219 SLTYPSLCIGVSNVSVFDYFGNTHLWQLQITL 314
S++ PS+C ++ DY TH+ Q+ I+L
Sbjct: 609 SISTPSVCTSLTFAPTGDYLATTHVDQVGISL 640
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 160 VANFRNSSATTHFKFGYLAKRNN 92
V +N S T+ FK G+L K+NN
Sbjct: 213 VQQIKNGSKTSLFKKGFLFKKNN 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,579
Number of Sequences: 5004
Number of extensions: 53134
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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