Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i23
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...   186   2e-48
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...   150   2e-37
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...   137   1e-33
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...   135   4e-33
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...   125   4e-30
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...   115   4e-27
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...   102   4e-23
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...   100   1e-22
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    58   9e-10
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    27   1.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   5.7  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.7  
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    25   7.5  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   9.9  

>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score =  186 bits (453), Expect = 2e-48
 Identities = 85/136 (62%), Positives = 114/136 (83%)
 Frame = +2

Query: 146 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSV 325
           ++D+ KP ++RLSNI AA++VADAIRTSLGP+GMDKMIQ   GEV +TNDGATILK +SV
Sbjct: 11  FQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV 70

Query: 326 IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQL 505
           +HPAAKMLV+LS AQD+EAGDGTTSVV++AG++L  AEKLL+KGIHPTVI++ FQ+A   
Sbjct: 71  LHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGF 130

Query: 506 ALQVVENMSTPVDLNN 553
            +  ++  +  ++L++
Sbjct: 131 TVDCMKENALAIELSD 146


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score =  150 bits (363), Expect = 2e-37
 Identities = 71/123 (57%), Positives = 98/123 (79%)
 Frame = +2

Query: 182 SNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELS 361
           S+I A K VA+ +RTSLGPRG+DK++ + +GE+T+TNDGATIL QM V H  AK+LV+LS
Sbjct: 38  SHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLS 97

Query: 362 RAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPV 541
           ++QD E GDGTT VVV+AGALL+ AE L+ KGIHP  I+DG++KA Q+A++ ++ +S  V
Sbjct: 98  KSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVV 157

Query: 542 DLN 550
           D +
Sbjct: 158 DFS 160


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score =  137 bits (331), Expect = 1e-33
 Identities = 64/126 (50%), Positives = 93/126 (73%)
 Frame = +2

Query: 176 RLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVE 355
           ++SNI AAKAVAD IRT LGPR M KM+    G V +TNDG  IL+++ V HPAAK ++E
Sbjct: 21  QMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIE 80

Query: 356 LSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMST 535
           L+R QD E GDGTTSV+++AG +L +A  LL + IHP V+   F++AL+ AL +++ ++ 
Sbjct: 81  LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITL 140

Query: 536 PVDLNN 553
           PV++++
Sbjct: 141 PVNVDD 146


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score =  135 bits (327), Expect = 4e-33
 Identities = 67/134 (50%), Positives = 93/134 (69%)
 Frame = +2

Query: 152 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIH 331
           D S+     LSNINA  AV D IRT+LGP G DK++    GEV I+NDGATI+K + ++H
Sbjct: 18  DDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVH 77

Query: 332 PAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLAL 511
           PAAK LV+++RAQD E GDGTTSVVV AG LL  A   ++ G+   +I  G++KA QLA+
Sbjct: 78  PAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAV 137

Query: 512 QVVENMSTPVDLNN 553
             ++ ++  +DL++
Sbjct: 138 NKIKEIAIHLDLSD 151


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score =  125 bits (302), Expect = 4e-30
 Identities = 63/132 (47%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
 Frame = +2

Query: 152 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIH 331
           +K    D+R  N+ A  A+A+ +++SLGP G+DKM+    G+VT+TNDGATIL  + V H
Sbjct: 15  EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74

Query: 332 PAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLAL 511
           PA K+LVEL++ QD E GDGTTSVV+IA  LL  A +L++  IHPT I  G++ A++ A+
Sbjct: 75  PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134

Query: 512 Q-VVENMSTPVD 544
           + + + +S  VD
Sbjct: 135 KFMTDVLSCSVD 146


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score =  115 bits (277), Expect = 4e-27
 Identities = 57/120 (47%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
 Frame = +2

Query: 176 RLSNINAAKAVADAIRTSLGPRGMDKMIQA-ANGEVTITNDGATILKQMSVIHPAAKMLV 352
           RLS+   A AV D ++++LGP+GMDK++Q+ ++G++ +TNDGATILK +++ + AAK+LV
Sbjct: 22  RLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLV 81

Query: 353 ELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMS 532
            +S+ QD E GDGTTSV V A  LL  AE ++   IHP VI DG++ A + A+  +   S
Sbjct: 82  NISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASS 141


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score =  102 bits (244), Expect = 4e-23
 Identities = 51/145 (35%), Positives = 85/145 (58%)
 Frame = +2

Query: 95  IMAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANG 274
           +  PKA G  +      Y+      D  + N NA + +++  RTSLGP G +K++     
Sbjct: 3   LRVPKASGPQLFREG--YRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQ 60

Query: 275 EVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQK 454
           +  +TND ATI++++ VIHPAAK++V+ ++ Q+ E GD    VVV  G LL  AE +++ 
Sbjct: 61  QTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRM 120

Query: 455 GIHPTVISDGFQKALQLALQVVENM 529
           G+ P  I+ G++ AL   ++V+E +
Sbjct: 121 GLTPLEIAKGYEMALSHTMEVLEEI 145


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score =  100 bits (240), Expect = 1e-22
 Identities = 46/122 (37%), Positives = 76/122 (62%)
 Frame = +2

Query: 185 NINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSR 364
           NI+AA  + D ++++LGP G  KM+    G + +T DG  +L +M + +P A  + + + 
Sbjct: 21  NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAAT 80

Query: 365 AQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVD 544
           AQD   GDGTTSV ++ G LL  AE  +++G+HP++ISDGF  A   AL  +++  T  +
Sbjct: 81  AQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFE 140

Query: 545 LN 550
           ++
Sbjct: 141 VD 142


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 58.0 bits (134), Expect = 9e-10
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 5/153 (3%)
 Frame = +2

Query: 80  RLNINIMAPKAGGD-AIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKM 256
           RL + I   +  G  A+    +  KD     D R S +     +A A+  +LGP+G + +
Sbjct: 11  RLPLRIAGRRIPGRFAVPQVRTYAKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVL 70

Query: 257 IQAANGEVTITNDGATILKQMSV----IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 424
           I    G   IT DG T+ + +S+     +  A+++ +++   +  AGDGTT+  V+  A+
Sbjct: 71  IDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAI 130

Query: 425 LDSAEKLLQKGIHPTVISDGFQKALQLALQVVE 523
                + +  G +P  +  G Q A+   ++ ++
Sbjct: 131 FSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQ 163


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 319 ECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVVGF 432
           EC  S  K+  ++I+C R+ S+  N I S Y    +GF
Sbjct: 87  ECLLSGGKSFAKVINCLRFPSFLINFIFSVYQTSALGF 124


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 29/116 (25%), Positives = 43/116 (37%)
 Frame = +2

Query: 158  SKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPA 337
            +K  D     + A    AD + TS     M + +  ANG+    +         S  HPA
Sbjct: 1859 TKNRDSLYQKLVARAPGADVLSTSHFATSMSRDLGKANGKSNFLSSKLANALSFSTTHPA 1918

Query: 338  AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQL 505
             K        ++I   +    V  +AG   +    L Q  + P VI+D   K L L
Sbjct: 1919 TKRW----ERREISNFNYLQIVNTLAGRTYND---LTQYPVFPWVIADYTSKELDL 1967


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 439 LSRIQQRTSNNNY*CCSITSFNI 371
           LS  Q  TS NN+ C SI +F I
Sbjct: 177 LSNRQLNTSENNWTCLSIENFGI 199


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 443 LLQKGIHPTVISDGFQ--KALQLALQVVENMSTPVDL 547
           +L +G    ++ D  Q  K  + AL+V++NM T VDL
Sbjct: 375 ILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDL 411


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 414 AITTTDVVPSPASIS*ARDNSTNIFAAG*ITLICFKIVAPSLVIVTSPLAA*IILSI 244
           A+  + + P P + S  RD+   I A   I LI F   + +L+ +  P+A  II ++
Sbjct: 512 ALVRSMIFPKPTNFSFYRDSFRFITAMFIIALIGFVFSSINLLTLGVPIATIIIRAL 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,617
Number of Sequences: 5004
Number of extensions: 39503
Number of successful extensions: 117
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)