Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i23
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.4  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 146 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPR 241
           Y+   KP +  ++ INA K +  AIR  +GP+
Sbjct: 493 YRLNHKPFNFHIT-INADKPMKAAIRIFIGPK 523


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 146 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPR 241
           Y+   KP +  ++ INA K +  AIR  +GP+
Sbjct: 493 YRLNHKPFNFHIT-INADKPMKAAIRIFIGPK 523


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 539 LELTYFRPPVKPIEGLFGNHQKLQLDVCLSEEVSQQNP 426
           L+ TYF       E L G H+K  L+  LS   + + P
Sbjct: 35  LQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERP 72


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 539 LELTYFRPPVKPIEGLFGNHQKLQLDVCLSEEVSQQNP 426
           L+ TYF       E L G H+K  L+  LS   + + P
Sbjct: 35  LQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERP 72


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 275 EVTITNDGATILKQMSVIHPAAKMLVELSRAQDI 376
           E+ + NDG+  L ++ +IH A        R QD+
Sbjct: 358 EIRVFNDGSLYLTKVQLIH-AGNYTCHAVRNQDV 390


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +1

Query: 397 ISSCYCWC 420
           + SC CWC
Sbjct: 8   VMSCCCWC 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,178
Number of Sequences: 438
Number of extensions: 2788
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)