Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i21
         (175 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   0.33 
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    26   0.58 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   1.8  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    23   4.1  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 14   KTYFTKVLKKNGPKKYFVVYLXRS*RKTH*SYKKEMYR 127
            K +F+K+L+++  K    VY  +   K+H  Y KE+ R
Sbjct: 1830 KGWFSKLLRRDESKDQPTVYKAKLGEKSHLHYDKELKR 1867


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 19  IFYKSIEKKWPKKIFCCLFATQLKK 93
           I Y+++EK+ P+ I C L+AT  +K
Sbjct: 48  ISYETLEKEAPEGIDCFLYATSWEK 72


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 73   INNKIFFWAIFFQYFCKICFL 11
            INN+ F W ++F + C I F+
Sbjct: 1373 INNEAFNWRVYFGW-CSIAFI 1392


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 58  IFCCLFATQLKKNXLILQKRNVQGIC 135
           I CC+    +K   LIL K  +   C
Sbjct: 173 IICCILFVYIKSGDLILNKALICSTC 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,151
Number of Sequences: 5004
Number of extensions: 9308
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)