Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i21
         (175 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0042 - 10513799-10514152,10514252-10514545,10514630-105148...    27   2.8  

>01_02_0042 -
           10513799-10514152,10514252-10514545,10514630-10514893,
           10515019-10515285,10515363-10516207,10516311-10516584,
           10516694-10517219,10518009-10518247,10518370-10518591,
           10518689-10518864,10518962-10519358
          Length = 1285

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 48  AQKNILLFICXAAKEKXTDLTKKKCTGYL 134
           A  +I   +  +A+EK  DL KKKC G L
Sbjct: 906 AVSSIRTVVSFSAEEKVMDLYKKKCEGPL 934


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,644,182
Number of Sequences: 37544
Number of extensions: 42133
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)