Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i18
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93378-7|CAB07587.1|  605|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z93375-5|CAB07566.1|  605|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U23514-11|AAM48531.1|  287|Caenorhabditis elegans Long protein 1...    27   7.0  
U23514-10|AAK95879.1|  301|Caenorhabditis elegans Long protein 1...    27   7.0  
U23514-9|AAC46538.1|  312|Caenorhabditis elegans Long protein 1,...    27   7.0  

>Z93378-7|CAB07587.1|  605|Caenorhabditis elegans Hypothetical
           protein C38C6.6 protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = +1

Query: 313 TTPPSISVTNYSTTLHIL*TDDVTVLPLGSKECAEVSYFRNQNS*CWWWEWDRELAFLAQ 492
           T PP + +   +  L      DV++ P+G   C +V+    +   C W +  R+L  L  
Sbjct: 348 TLPPGVHINRLAMKL------DVSIQPIGKLRCMDVATCGRECFYCDWCKESRKLKLLEN 401

Query: 493 RLSDQCQ 513
              + C+
Sbjct: 402 TEGNLCR 408


>Z93375-5|CAB07566.1|  605|Caenorhabditis elegans Hypothetical
           protein C38C6.6 protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = +1

Query: 313 TTPPSISVTNYSTTLHIL*TDDVTVLPLGSKECAEVSYFRNQNS*CWWWEWDRELAFLAQ 492
           T PP + +   +  L      DV++ P+G   C +V+    +   C W +  R+L  L  
Sbjct: 348 TLPPGVHINRLAMKL------DVSIQPIGKLRCMDVATCGRECFYCDWCKESRKLKLLEN 401

Query: 493 RLSDQCQ 513
              + C+
Sbjct: 402 TEGNLCR 408


>U23514-11|AAM48531.1|  287|Caenorhabditis elegans Long protein 1,
           isoform c protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 463 WDRELAFLAQRLSDQCQFVHDDCRATV 543
           W  ELA  AQR +D C F H   R  V
Sbjct: 105 WSDELAASAQRHADTCDFRHSRGRINV 131


>U23514-10|AAK95879.1|  301|Caenorhabditis elegans Long protein 1,
           isoform b protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 463 WDRELAFLAQRLSDQCQFVHDDCRATV 543
           W  ELA  AQR +D C F H   R  V
Sbjct: 105 WSDELAASAQRHADTCDFRHSRGRINV 131


>U23514-9|AAC46538.1|  312|Caenorhabditis elegans Long protein 1,
           isoform a protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 463 WDRELAFLAQRLSDQCQFVHDDCRATV 543
           W  ELA  AQR +D C F H   R  V
Sbjct: 105 WSDELAASAQRHADTCDFRHSRGRINV 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,155,672
Number of Sequences: 27780
Number of extensions: 278138
Number of successful extensions: 816
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)