Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i18
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   0.92 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 309 ENYTAIDFGNKLQHY 353
           +N T IDFG  +QHY
Sbjct: 57  KNATKIDFGLSIQHY 71


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 264 HVACQFPNAGPGSSCENYT 320
           H  C++PNA      +NYT
Sbjct: 433 HFQCRYPNASVTPYNKNYT 451


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 192 ALTRSPRGK*TLSDICIKLK 133
           A  R P G+ T +DIC  LK
Sbjct: 665 ATARLPNGEGTRADICQLLK 684


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,082
Number of Sequences: 438
Number of extensions: 3336
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)