Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i17
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   6.5  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    25   6.5  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    25   8.5  

>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 425 WMHSGVFFFQKTFCFCI 375
           W+++ +FF  + FCF I
Sbjct: 345 WVYACIFFLTRVFCFLI 361


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +3

Query: 105 SSFLYIICISFGSDIMKTTQVAQYALRLTYSQQANREKMMTRSALLLATIGLGLSTFSVR 284
           S FL +    F + I     +    L  TY      EK+ T   LL +T+GL     S  
Sbjct: 289 SDFLALRSALFATHIEDLHNITSNQLYETY----RTEKLSTSQLLLDSTVGLDGKNLSQH 344

Query: 285 QMILNQSR 308
             +L + R
Sbjct: 345 DQVLREDR 352


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 138 GSDIMKTTQVAQYALRLTYSQQANREKMMTRSALLLATIGLGLSTFS 278
           GSDI    Q  Q  LRLT    +  +K+  ++  L   +GL +  F+
Sbjct: 318 GSDIDMGVQRMQEMLRLTEIMFSEEQKVGFKTEELAKELGLSVEEFT 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,763
Number of Sequences: 5004
Number of extensions: 38996
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)