Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i12
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    30   1.7  
03_05_0783 - 27662178-27662237,27662659-27662700,27662791-276628...    28   6.9  
01_05_0514 - 22876264-22878567                                         27   9.2  

>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 109  ENKIILRRSKFS*HNTMTSARSPHSLETILTFENND 216
            E K++ R SK   HN+   A+ PH+L T+L F N +
Sbjct: 1622 EMKLVHRVSK---HNSYEMAKEPHALNTMLAFINGN 1654


>03_05_0783 -
           27662178-27662237,27662659-27662700,27662791-27662892,
           27662991-27663147,27663230-27663307,27663391-27663446,
           27663557-27663634,27663736-27663867,27663943-27664078,
           27664252-27664403,27665317-27665391,27665476-27665535,
           27665865-27665944,27666392-27666462,27666549-27666689,
           27667467-27667555,27668657-27668731,27669303-27669401,
           27669526-27669572,27669654-27669875,27671485-27671557,
           27671650-27671823
          Length = 732

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 32  LLGLQIDEITKKPSKICIVFLHVCFRKIKLYCEGQNSHNTI 154
           LLG   +++T   +K    +LH   +++K YC   N +N +
Sbjct: 329 LLGALFNQLTLYITKWRRTYLHKKGKRVKFYCSKDNEYNDL 369


>01_05_0514 - 22876264-22878567
          Length = 767

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 619 DCELFQPTHCXVVSYSFIGAGFSAYVDLCNVKDVN 515
           DCEL    +C   +YS+ G+    Y DL N++  N
Sbjct: 330 DCELACLGNCSCTAYSYNGSCTLWYGDLINLRGAN 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,593,328
Number of Sequences: 37544
Number of extensions: 273748
Number of successful extensions: 558
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)