Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i12
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    27   0.11 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.60 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.60 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 21/87 (24%), Positives = 34/87 (39%)
 Frame = +3

Query: 222 FVMYLALACILLANPLRHFEVYLGQWSISGPGRAFRIIPMFDXXXXXXXXXXXXXXXXXX 401
           F++   L  +L   P+   E+ LGQ    G    F+I P+F                   
Sbjct: 19  FLIPYFLTLVLAGIPMFFMELALGQMLTVGGLGVFKIAPLFKGIGYAAAVMSCWMNVYYI 78

Query: 402 TIAAIAAVYVLYSVADAKLPFTYCRDF 482
            I A A  Y   S+  ++LP+  C ++
Sbjct: 79  VILAWAIFYFFMSMR-SELPWGSCNNY 104


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 22/84 (26%), Positives = 32/84 (38%)
 Frame = +3

Query: 222 FVMYLALACILLANPLRHFEVYLGQWSISGPGRAFRIIPMFDXXXXXXXXXXXXXXXXXX 401
           F++   +A  L   P+   E+ LGQ    G    F+I P+F                   
Sbjct: 57  FMVPYFIALALAGVPMFLMELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSCWTNIYYI 116

Query: 402 TIAAIAAVYVLYSVADAKLPFTYC 473
            I A A  Y+L S+    LP+  C
Sbjct: 117 IILAWALFYLLVSLR-IDLPWRTC 139


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 22/84 (26%), Positives = 32/84 (38%)
 Frame = +3

Query: 222 FVMYLALACILLANPLRHFEVYLGQWSISGPGRAFRIIPMFDXXXXXXXXXXXXXXXXXX 401
           F++   +A  L   P+   E+ LGQ    G    F+I P+F                   
Sbjct: 110 FMVPYFIALALAGVPMFLMELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSCWTNIYYI 169

Query: 402 TIAAIAAVYVLYSVADAKLPFTYC 473
            I A A  Y+L S+    LP+  C
Sbjct: 170 IILAWALFYLLVSLR-IDLPWRTC 192


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 88  NYTNFTRLFCNFINL 44
           NY N+ +L+ N IN+
Sbjct: 345 NYNNYKKLYYNIINI 359


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 167 PVVHIPWKPYLHLRTMINFRNVLSTGMYIASKPVASFRSLPRSME 301
           P + I +   +  RT+  F N++   + IAS  V  F   P S E
Sbjct: 217 PYIDITFVVIIRRRTLYYFFNLIVPCVLIASMAVLGFTLPPDSGE 261


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 371 DTYSYTNTVKHRYNTKGSAGSTYAPLTEVNFEMTQRVC 258
           D Y Y NT+ +       + +  A ++EV   +  R+C
Sbjct: 376 DVYLYQNTMSNNNQRTEWSATVKAAISEVQRVVLGRLC 413


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 371 DTYSYTNTVKHRYNTKGSAGSTYAPLTEVNFEMTQRVC 258
           D Y Y NT+ +       + +  A ++EV   +  R+C
Sbjct: 414 DVYLYQNTMSNNNQRTEWSATVKAAISEVQRVVLGRLC 451


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 163 SSSYCVMRILTFAI*FYFPK 104
           S  YC+  +L FA   YF K
Sbjct: 314 SFGYCIATLLEFAGVHYFTK 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,972
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)