Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i11
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1626 + 34863691-34863762,34863895-34863939,34864047-348641...    98   7e-21
08_02_0632 + 19515234-19515374,19515489-19515656,19518907-195189...    29   3.5  
07_03_0462 + 18444928-18444999,18446948-18447985,18448015-184488...    29   4.6  

>04_04_1626 +
           34863691-34863762,34863895-34863939,34864047-34864113,
           34864234-34864310,34864570-34864605,34864687-34864742,
           34864816-34864915,34864995-34865090,34865167-34865256,
           34865466-34865517,34866101-34866156
          Length = 248

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 47/94 (50%), Positives = 71/94 (75%)
 Frame = +2

Query: 407 VLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMGGEDVVSNF 586
           VL LFDVDGTLT PR+ +T E  +F + +++  V VG+V GSD +KISEQ+G + V +++
Sbjct: 9   VLALFDVDGTLTAPRKVVTPEMLQF-MKQLREHVTVGVVGGSDLVKISEQLG-KSVTTDY 66

Query: 587 NYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQE 688
           +Y FSENGLV HKNG+ + ++S+ + LG+ +L+E
Sbjct: 67  DYCFSENGLVAHKNGELIGTQSLKSFLGDDQLKE 100


>08_02_0632 +
           19515234-19515374,19515489-19515656,19518907-19518993,
           19519551-19519685,19519778-19519882,19519968-19520059,
           19520147-19520252,19520320-19520424,19520516-19520929
          Length = 450

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 454 KNYRRIQEVHS*RGKIKSGCRIGQWFRLYEDFRTNGRRGRR--VQFQLR 594
           KNYR  Q +   R +    C+  +    Y DF+ N RR R   V FQLR
Sbjct: 86  KNYRNYQNLSYAREEALKDCKKVEKDSPYYDFQYNTRRARPSIVHFQLR 134


>07_03_0462 +
           18444928-18444999,18446948-18447985,18448015-18448845,
           18449112-18449120
          Length = 649

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +2

Query: 386 IMTSQK-KVLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMG 562
           IMT ++ K+ Y  D+D  +  P Q+ T E      D    KV +G +  +  + I   + 
Sbjct: 363 IMTLREIKICYKSDIDSIIGDPEQESTSETFSGKSDVAMGKVYMGRLKNTPLIVIKMSVE 422

Query: 563 -GEDVVSNFNYVFSENGLVHHKNGKKL 640
             ED    F Y       + H N  KL
Sbjct: 423 VDEDWKQTFFYEMIMQSRIKHWNVAKL 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,939,860
Number of Sequences: 37544
Number of extensions: 322096
Number of successful extensions: 748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)