Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i09
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   3.4  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   6.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   6.0  
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    24   7.9  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    24   7.9  

>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 85  GILLNYWLSKHCGSQP 38
           GILLNYW + + G++P
Sbjct: 173 GILLNYWENAYDGNKP 188


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -2

Query: 310 FILISINDNILKAQQHHAFINFSLLLVDIKTKCVFQHSCFFNPSICKTTYV 158
           F +IS ND +L +      ++F        T   F+H   F+   C + ++
Sbjct: 471 FAIISANDQVLNSTNVKTNLSFYGFEQKKNTPSTFRHIITFDKKTCNSLFM 521


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/47 (25%), Positives = 29/47 (61%)
 Frame = -2

Query: 379  FIYQNTLFASVLY*NIEQVGDFLFILISINDNILKAQQHHAFINFSL 239
            F ++N+ + S+ +  + +VG+ ++ LIS + + LK   H+  ++ +L
Sbjct: 1867 FHFENSKWESLRHVRVNRVGEHIYPLISYDQDELK---HYMVVDVNL 1910


>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 171

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 235 LVDIKTKCVFQHSCFFNPSI 176
           LV     CVF H+ FF P +
Sbjct: 141 LVGASCVCVFGHAAFFEPPV 160


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 94  STFGILLNYWLSKHCGSQP 38
           S  G ++NY+ +KH GS P
Sbjct: 629 SCAGYVVNYFTAKHFGSNP 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,645
Number of Sequences: 5004
Number of extensions: 30362
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)