Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i09
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-8|AAD12840.2|  317|Caenorhabditis elegans Serpentine re...    27   5.2  
Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical ...    27   6.9  
AF039042-7|AAC48250.1|  336|Caenorhabditis elegans Seven tm rece...    27   6.9  

>AF125459-8|AAD12840.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 21 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = -2

Query: 367 NTLFASVLY*NIEQVGDFLFILISINDNILKAQQHHAFINFSLLLVDIKTKCVFQHSCFF 188
           NT+F S    N E   +  F ++   + ++        + FS L  D+   C      FF
Sbjct: 51  NTIFKSK---NKEHYRNNSFYILYTTEAVVNIYTSCVAVFFSRLFSDVTPLCPLVAPYFF 107

Query: 187 NPSI-CKTTYVFDIHIY*LKYLKTIRMS 107
            PSI  K  Y  + ++   K L  I +S
Sbjct: 108 TPSIITKAYYTINHYMLAFKTLSQIAVS 135


>Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical
           protein T07D10.4 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 100 Y*STFGILLNYWLSKHCGSQ 41
           Y ST G+L   WLS++C SQ
Sbjct: 126 YYSTQGVLTGKWLSENCESQ 145


>AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical
           protein H16D19.1 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 100 Y*STFGILLNYWLSKHCGSQ 41
           Y ST G+L   WLS++C SQ
Sbjct: 126 YYSTQGVLTGKWLSENCESQ 145


>AF039042-7|AAC48250.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 160 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 73  LIRYQM*ISKFMTFL*F*DTLINKYVYQKHTWFYKLMD*KNMNVEKH 213
           L+ Y   +S F+ FL   D LI+ YVY   +    +MD ++   EKH
Sbjct: 44  LLCYFSMLSSFVAFL---DLLISPYVYSFGSCAVTIMDLRDTIFEKH 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,597,697
Number of Sequences: 27780
Number of extensions: 164697
Number of successful extensions: 296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)