Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i06
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603...    30   1.2  
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    28   6.7  
05_03_0168 - 9116648-9117775,9118699-9118885,9119724-9119821,911...    28   6.7  
09_04_0265 + 16233596-16233752,16234206-16234720,16236199-162362...    27   8.8  
01_06_1266 - 35865046-35866395                                         27   8.8  

>03_06_0759 -
           36059872-36059928,36059934-36060125,36060241-36060348,
           36060440-36060712,36060923-36061009,36061085-36061276,
           36061841-36061969,36062087-36062200,36062446-36062490,
           36062785-36062956,36063229-36063515,36063989-36064456
          Length = 707

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 195 LSSIDF-YLSVIGNCLVFLGFVIGKINSDNQYTFFISNLLILLGHLVALMTELTTLYED- 368
           LSSI F +L  I + LVF  F+IG  N  N + +F+  + + L    ALM  +  ++ D 
Sbjct: 520 LSSIPFLFLVTISSSLVFY-FLIGLRNEFNLFMYFVVTMFMCLLANEALMMIVAYIWLDT 578

Query: 369 YLC 377
           Y C
Sbjct: 579 YKC 581


>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
            2233053-2233513,2233593-2233717,2233801-2234098,
            2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 360  YEDYLCLKNGKRDYEINSYFTFANILSILGEYKEMNFGMENYERDCG 500
            + D  C      +YE  +YF+F  +L       +  FGM N  +D G
Sbjct: 1754 WNDISCGSVAGDEYEPQTYFSFTELLEADDTQFDNTFGMSNSVQDDG 1800


>05_03_0168 -
           9116648-9117775,9118699-9118885,9119724-9119821,
           9119948-9120114,9122242-9122578
          Length = 638

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 267 INSDNQYTFFISNLLILLGHLVALMTELTTLYEDYLCLKNGKRDYEINSYF 419
           +N  N Y  FIS  LI+   ++  +T +TT   ++  L+  + D  + +YF
Sbjct: 256 LNGQNGYKVFISVTLIITDGMINFLTLITTASINFYQLRK-EHDLGLANYF 305


>09_04_0265 +
           16233596-16233752,16234206-16234720,16236199-16236229,
           16236559-16237001
          Length = 381

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 306 LLILLGHLVALMTELTTLYEDYLCLKNGKRDYEINSYFTFANILSILG 449
           +L + G LV  + E     EDY  +  G RDY  + +  F + ++++G
Sbjct: 74  MLAVAGILVPEVLEKWGFMEDYSWIDAGARDYFADPWTLFVSQMALMG 121


>01_06_1266 - 35865046-35866395
          Length = 449

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +1

Query: 34  LNVVRSGIGTRNKIMKNQPKY*QSSFVILSCELRLFPKCHR---PTDVNYEQSPGLFCLL 204
           +++  +G  T +K+ K +P   Q  F +LS E  LF   +    PTD+N    P   C+L
Sbjct: 55  VSIAITGARTSSKLAKAEPD--QFGFFLLSDEA-LFEAIYEQPPPTDLNPNPEPNPGCVL 111

Query: 205 ST 210
           S+
Sbjct: 112 SS 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,723,990
Number of Sequences: 37544
Number of extensions: 273925
Number of successful extensions: 557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)