Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12i04
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82053-2|CAB04835.1|  365|Caenorhabditis elegans Hypothetical pr...   103   8e-23
AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical ...    39   0.003
AF067946-2|AAC17685.1|  223|Caenorhabditis elegans Nudix family ...    37   0.013
U55855-1|AAA98017.1|  188|Caenorhabditis elegans Nudix family pr...    36   0.031
Z68748-2|CAA92955.3|  374|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AF305937-1|AAG37064.1|  348|Caenorhabditis elegans NADH pyrophos...    33   0.16 
Z82269-7|CAB05204.2|  786|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical pr...    31   0.66 
DQ143943-1|AAZ73241.1|  770|Caenorhabditis elegans RNA-decapping...    31   0.66 
AL021488-8|CAJ43919.1|  786|Caenorhabditis elegans Hypothetical ...    31   0.66 
AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical ...    31   0.66 
U23484-4|AAC46768.2|  260|Caenorhabditis elegans Nudix family pr...    29   3.5  
AL032625-2|CAB63351.1|  138|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z79753-7|CAB02085.2|  448|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    28   6.1  

>Z82053-2|CAB04835.1|  365|Caenorhabditis elegans Hypothetical
           protein T26E3.2 protein.
          Length = 365

 Score =  103 bits (248), Expect = 8e-23
 Identities = 49/93 (52%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
 Frame = +3

Query: 348 LGGNVTYVVACVIIN---EFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLE 518
           L  NV YV A +I+    +  EVL++QEAK+SC GKWY+PAGR+E GETI +A VREV E
Sbjct: 68  LHDNVNYVAAAIILRNQGDDTEVLLIQEAKKSCRGKWYMPAGRVEAGETIEEAVVREVKE 127

Query: 519 ETGLQCDLKTLLVVETAGGSWYRFVLTGEIIGG 617
           ETG  CD+  LL ++  G  WYR+     I GG
Sbjct: 128 ETGYSCDVVELLSLQVQGSGWYRYAFYCNITGG 160


>AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.5 protein.
          Length = 150

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +3

Query: 405 VLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETGLQCDL 542
           VL++   K+   GKW +P G +EK E   +AA RE++EE G++  +
Sbjct: 41  VLLVSGGKDG--GKWVVPGGGIEKDECAEEAAHRELMEEAGVRATI 84


>AF067946-2|AAC17685.1|  223|Caenorhabditis elegans Nudix family
           protein 2 protein.
          Length = 223

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
 Frame = +3

Query: 309 GITPTTPSNFKPV-LGGNVTYVVACVIINEFNEVLMMQEAKESCAGKWYL--PAGRMEKG 479
           G+  +   N KPV    +   ++A V       ++++++ +  C GK  L  PAG ++ G
Sbjct: 58  GVWQSVHRNTKPVEASADGVSIIARVRKQGKLYIVLVKQYRIPC-GKLCLELPAGLIDAG 116

Query: 480 ETIVQAAVREVLEETG 527
           ET  QAA+RE+ EETG
Sbjct: 117 ETAQQAAIRELKEETG 132


>U55855-1|AAA98017.1|  188|Caenorhabditis elegans Nudix family
           protein 3 protein.
          Length = 188

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 360 VTYVVACVIINEFNEVLMMQEA--KESCAGKWYLPAGRMEKGETIVQAAVREVLEETGLQ 533
           ++ ++  V ++  + VL+ + +    S  G+   P GRM+ GET  + A+RE  EE G+ 
Sbjct: 1   MSVLIPLVTVDGRDSVLLTKRSIHLRSHRGEVCFPGGRMDPGETTTETALRETFEEIGVN 60

Query: 534 CD 539
            +
Sbjct: 61  AE 62


>Z68748-2|CAA92955.3|  374|Caenorhabditis elegans Hypothetical
           protein F13H10.2 protein.
          Length = 374

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 381 VIINEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETGLQCD 539
           +I +  NE  ++   + S  G +   AG    GE++ + A RE+ EE G++ D
Sbjct: 217 LITDPTNEHALLVRHRGSAGGVFTAVAGFAHSGESMAECARREIAEEVGIEVD 269


>AF305937-1|AAG37064.1|  348|Caenorhabditis elegans NADH
           pyrophosphatase protein.
          Length = 348

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 381 VIINEFNEVLMMQEAKESCAGKWYLPAGRMEKGETIVQAAVREVLEETGLQCD 539
           +I +  NE  ++   + S  G +   AG    GE++ + A RE+ EE G++ D
Sbjct: 191 LITDPTNEHALLVRHRGSAGGVFTAVAGFAHSGESMAECARREIAEEVGIEVD 243


>Z82269-7|CAB05204.2|  786|Caenorhabditis elegans Hypothetical
           protein F52G2.1b protein.
          Length = 786

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 375 ACVIINEFNEVLMMQEAKESCAGK-WYLPAGRMEKGETIVQAAVREVLEETG 527
           A ++  E + V+++Q       GK W  P G++ + E    AA+RE  EETG
Sbjct: 245 AILVDPEMDHVVLVQSY--FAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 294


>Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 375 ACVIINEFNEVLMMQEAKESCAGK-WYLPAGRMEKGETIVQAAVREVLEETG 527
           A ++  E + V+++Q       GK W  P G++ + E    AA+RE  EETG
Sbjct: 268 AILVDPEMDHVVLVQSY--FAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 317


>DQ143943-1|AAZ73241.1|  770|Caenorhabditis elegans RNA-decapping
           protein protein.
          Length = 770

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 375 ACVIINEFNEVLMMQEAKESCAGK-WYLPAGRMEKGETIVQAAVREVLEETG 527
           A ++  E + V+++Q       GK W  P G++ + E    AA+RE  EETG
Sbjct: 229 AILVDPEMDHVVLVQSY--FAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 278


>AL021488-8|CAJ43919.1|  786|Caenorhabditis elegans Hypothetical
           protein F52G2.1b protein.
          Length = 786

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 375 ACVIINEFNEVLMMQEAKESCAGK-WYLPAGRMEKGETIVQAAVREVLEETG 527
           A ++  E + V+++Q       GK W  P G++ + E    AA+RE  EETG
Sbjct: 245 AILVDPEMDHVVLVQSY--FAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 294


>AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 375 ACVIINEFNEVLMMQEAKESCAGK-WYLPAGRMEKGETIVQAAVREVLEETG 527
           A ++  E + V+++Q       GK W  P G++ + E    AA+RE  EETG
Sbjct: 268 AILVDPEMDHVVLVQSY--FAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 317


>U23484-4|AAC46768.2|  260|Caenorhabditis elegans Nudix family
           protein 6 protein.
          Length = 260

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 441 GKWYLPAGRMEKGETIVQAAVREVLEE 521
           G+W +P G ++ GE + Q   RE  EE
Sbjct: 141 GEWAIPGGMVDAGEHVSQTLRREFAEE 167


>AL032625-2|CAB63351.1|  138|Caenorhabditis elegans Hypothetical
           protein Y37H9A.6 protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 447 WYLPAGRMEKGETIVQAAVREVLEETGLQCDLKTL 551
           W  P G ++ GE   QAA+RE  EE  +  +  T+
Sbjct: 32  WTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTI 66


>Z79753-7|CAB02085.2|  448|Caenorhabditis elegans Hypothetical
           protein F20G2.5 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 240 LDSEGKDFCDFTIADQNSVAESQGITPTTPSNFK 341
           +DS      D  I DQN V +S    P TP+ F+
Sbjct: 223 VDSMETYIIDLNIVDQNVVGQSISFKPLTPTQFQ 256


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -2

Query: 616 PPIISPVSTNLYQEPPAVSTTSKVLRSH*RPVSSNTSLTAACTIVSPFSILPAG 455
           P  +SP  +     PP  STT     +     SS  S TA+ T+ SP S  P G
Sbjct: 465 PSFLSPTDSLTATTPPG-STTQAASTTESAMASSIESPTASVTVSSPKSTEPLG 517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,539,214
Number of Sequences: 27780
Number of extensions: 249691
Number of successful extensions: 615
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)