Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h24
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     30   0.16 
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    27   2.0  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   3.5  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    26   3.5  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   3.5  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   4.6  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   4.6  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   6.1  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   8.1  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 112  LPHYRRWLW--PNLSFIKKKKTFTILEVRRTKVASLDFMVRKEETWGVILNVLTTWIHLL 285
            LP +  W    P+ + +  KK   +  +    + +    V  +++WG I+ V+ T ++ L
Sbjct: 827  LPFFALWFENIPSFTRVHDKKLSLVAILSVISLGAQQVAVAIQDSWGNIMKVMITLLNTL 886

Query: 286  KDI*AARSHKLKE 324
             +  AAR+   KE
Sbjct: 887  PEALAARAELEKE 899


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 262 LTTWIHLLKDI*AARSHKLKESWARRDQKPERV 360
           LT  +  +KD+  + +H LKE   RRDQK + V
Sbjct: 253 LTLLLDTIKDV-ESYAHSLKELLKRRDQKQQDV 284



 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 242 HVSSLRTIKSRLATFVRRTSRIVKVFFFFIKLR 144
           HVS L   K+ L+ F R   ++ + F  F+KL+
Sbjct: 36  HVSYLIITKTNLSIFTRAECKVRRRFSDFVKLQ 68


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 5   SIYAACELPGFVCEYLALFQLLSVWINQNHETTTS 109
           +IYA  + P  +C  + L     ++   NHE TTS
Sbjct: 771 AIYAVAKHPDELCTNIILLLTKQLFKPSNHENTTS 805


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 321 GELGEEGSKTRT-GSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSN 488
           G  G + +  +T G+V +A  S   YG G Y        N +  T   NA ++   N
Sbjct: 221 GSYGNDNTANKTRGAVSSAGYSGEGYGKGTYATDTTAEANRRAATGTRNARTTAQRN 277


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 106 FCLPH-YRRWLWPNLSFIKKKKTFTILEVRRTKVASLDFMVRK 231
           FC+P   R+ +W +L   ++ +  T+     T   SLD  +RK
Sbjct: 169 FCIPSPCRKLVWQSLVSAERNELLTLYATLSTTNNSLDSSIRK 211


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 403 PDP*KPAEFAAVYTLPVLVFDPSSPNSPSTCEI 305
           P P + ++F  V  LP+   + SSPN  S  EI
Sbjct: 285 PPPWRDSDFETVPKLPIFYPNSSSPNFFSLSEI 317


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 279 VNPCCEHVQNYPPCFLFAHHKIQTCYLRPTNF*NSESLLFLY 154
           +NPC     N+     +   KI+   L  T+F ++E++ FLY
Sbjct: 49  LNPC-----NFSKSLFWLRKKIKNSVLLKTSFDSNETIFFLY 85


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 205 ASLDFMVRKEETWGVILNVLTTWIH 279
           A+L   +R+E TWG +  + TT IH
Sbjct: 23  ATLPLAIRRELTWGQVNILHTTDIH 47


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 263 STFKITPHVSSLRTIKS 213
           +TF ++P V+SLR IKS
Sbjct: 207 TTFGVSPRVASLREIKS 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,573
Number of Sequences: 5004
Number of extensions: 38752
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)