Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h24
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282...    29   2.6  
08_02_1351 + 26318023-26318665,26319386-26319543,26320843-263209...    27   6.1  

>02_03_0218 +
           16526082-16526375,16526606-16526725,16528078-16528238,
           16528601-16528634,16529296-16529398,16529784-16529963,
           16530726-16530742
          Length = 302

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = +3

Query: 288 RHLSGAISQVEGELGEEGSKTRT--GSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLD 461
           R  + A   +E   G+  S+ R    S Y   N    +GS + D     GR+F+      
Sbjct: 235 RERAFAPMNMENNFGQHDSRFRNRHDSNYAPRNMENKFGSNDSDFGTQSGRSFRHDPSFR 294

Query: 462 NAHSS 476
           N H S
Sbjct: 295 NQHGS 299


>08_02_1351 +
           26318023-26318665,26319386-26319543,26320843-26320930,
           26321953-26322185
          Length = 373

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -1

Query: 408 NFPIHKSPQNLQQCTRYPFWFLIPPRPTLLQLVRSRRSNVFEQVNPCCEHVQNYPP 241
           N P+    Q+L Q     F+FL+P R        +R   +  Q  P   +V+   P
Sbjct: 94  NHPVKLDSQDLLQIGDKKFYFLLPTRSIFASAAAARHPPIIPQQMPPPSYVRTGRP 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,564,792
Number of Sequences: 37544
Number of extensions: 259103
Number of successful extensions: 657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)