Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h24
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.0  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 405 NYDLSNLRGRNFQEGTYLDNAHSSLLSN 488
           N  + N +G+N Q+   +   +S+LLS+
Sbjct: 177 NIAIQNTQGKNNQQNILIPVNYSALLSH 204


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/12 (66%), Positives = 11/12 (91%), Gaps = 1/12 (8%)
 Frame = +2

Query: 26  LPGFVCE-YLAL 58
           LPGFVC+ Y+A+
Sbjct: 254 LPGFVCDFYIAM 265


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 346 FDPSSPNSPST 314
           F PS PNSP +
Sbjct: 63  FSPSGPNSPGS 73


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 346 FDPSSPNSPST 314
           F PS PNSP +
Sbjct: 63  FSPSGPNSPGS 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,938
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)