Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12h22
(407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 143 1e-35
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 95 3e-21
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 82 3e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 80 2e-16
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 29 0.28
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 28 0.49
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 28 0.64
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 2.6
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 7.9
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 7.9
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 24 7.9
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 24 7.9
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 24 7.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 143 bits (346), Expect = 1e-35
Identities = 57/91 (62%), Positives = 75/91 (82%)
Frame = +2
Query: 134 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 313
MREIVH+Q G+CGNQ+G+ FW I+DEHG+D G Y G S+ Q ER+NVY+NEA G KYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 314 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVV 406
PRAVLVDLEP TMD+++ G +G+++RPDN++
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNII 91
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 95.5 bits (227), Expect = 3e-21
Identities = 38/90 (42%), Positives = 64/90 (71%)
Frame = +2
Query: 137 REIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYVP 316
REI+ +Q G+CGNQIGS+FW+ + EHGI P G + + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 317 RAVLVDLEPSTMDSIRGGPYGSIYRPDNVV 406
RA+L+DLEP +++I YGS+Y P+N++
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENIL 92
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 82.2 bits (194), Expect = 3e-17
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Frame = +2
Query: 134 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLER--INVYYNEAFGAK 307
MREI+ + VG+ G QIG+ WE+ EHGI P G ++ Q + +++E K
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 308 YVPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVV 406
YVPR++ VDLEP+ +D +R GPY ++ P+ ++
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLI 93
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 79.8 bits (188), Expect = 2e-16
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 8/99 (8%)
Frame = +2
Query: 134 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGA--- 304
MRE++ V VG+ G QIG+ WE+ EHGI P G +S++ + N Y N+ FG
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVH--KNNSYLNDGFGTFFS 58
Query: 305 -----KYVPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVV 406
K+VPR++ VDLEP+ +D +R GPY ++ P+ +V
Sbjct: 59 ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMV 97
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.28
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 194 KTSSQSGSHISRPVRELFLSFSCINNKEFIEN 99
+ QS SHISR ELF + I N F EN
Sbjct: 74 REQEQSNSHISRNENELFSKENSIYNGNFSEN 105
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 28.3 bits (60), Expect = 0.49
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Frame = +2
Query: 200 VISDEHGIDPCGRYQGDSDLQLERINVYYNE--AFGAKYVPRAVL----VDLEPSTMDSI 361
++ +HG+D G + GDS ++ + Y++ FG P VL VDL P T+ +
Sbjct: 281 IVMGDHGMDNKGNHGGDSFDEINSVLWMYSKKPTFGYLKQPGKVLSANQVDLVP-TLSLL 339
Query: 362 RGG--PYGSI 385
G PYG++
Sbjct: 340 LGNPIPYGNL 349
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 27.9 bits (59), Expect = 0.64
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = -2
Query: 340 LEIYKNSSRNIFSSKCFVVVDIDPLELQIRVSLVAATGVDSVLVRYHFPKLRANLVPTSP 161
L +Y+ S ++ ++ P E+Q VS+V ++ +S+L +Y +++A LV T+P
Sbjct: 246 LRVYERSDIKTTIDALHLIKNLVP-EIQNTVSVVDSSIKESILKQYWDFRVQAQLVATAP 304
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 233 GRYQGDSDLQLERINVYYNEAFGAK 307
GR + L +N+YY +FGAK
Sbjct: 667 GRTDHRHNFSLHHLNLYYESSFGAK 691
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 24.2 bits (50), Expect = 7.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 4 YYLHFSFKHM*TFYFCVFCIFVLF*YLVLPQLFSINSLLL 123
Y+ F H F+F C+F+ F L L S+ L L
Sbjct: 146 YFSSFPILHFLFFFFLCVCVFLSF-LFSLSHLLSLAILFL 184
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 24.2 bits (50), Expect = 7.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2
Query: 265 ELQIRVSLVAATGVDSVLVRYHFPKLRANLVPTSPDLYVNYFSHSRVLITKNLSK 101
+L IR++ + + D V F + N D+YV SH+ + KN SK
Sbjct: 166 KLYIRIASILSNANDKV----SFKESSINTNTVFKDVYVEVSSHNDEFLLKNSSK 216
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 24.2 bits (50), Expect = 7.9
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +2
Query: 173 NQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERI 274
N++G EV++++ +DP + + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 24.2 bits (50), Expect = 7.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 314 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNV 403
P A V+ EP + + G P+ I+ P NV
Sbjct: 1588 PSAGSVEREPLFLIAASGSPHAFIWNPHNV 1617
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 230 CGRYQGDSDLQLERINVYYNEAFGAKYVP 316
C Y G D + + +NV+ GA+ VP
Sbjct: 424 CTIYMGAEDCRRQALNVFRIRLLGAEVVP 452
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,702
Number of Sequences: 5004
Number of extensions: 27154
Number of successful extensions: 97
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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