Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h22
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.1  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              20   9.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   9.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 169 TSPDLYVNYFSHSRVLITKNLS 104
           TSP+ +V  +   RVL +  L+
Sbjct: 104 TSPNKFVRLYQDGRVLYSSRLT 125


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 212 RQISLPKTSSQSGSHISRPVRELFLSFSCIN 120
           ++ S          H+SR + ++FL+ + IN
Sbjct: 68  KKFSFVDKDGNFNEHVSREIAKIFLNENEIN 98


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +2

Query: 371 PYGSIYRPDNVV 406
           PY  ++RPD ++
Sbjct: 83  PYNRVWRPDTIL 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,425
Number of Sequences: 438
Number of extensions: 1685
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)