Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h20
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    26   2.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   3.9  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   6.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   8.9  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 256 DASLRAANNGAVLFLVPAEVKARPLMHFKNDTFFVKTAFLRTKA 125
           D  L  A NGA + ++PA V  +P M  ++D F    + +R  A
Sbjct: 88  DKGLEKALNGADVVIIPAGVPRKPGM-TRDDLFATNASIVRDLA 130


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 70  NTKFSSNKPASKQNQRKQ 123
           N KFSSN P  KQ ++KQ
Sbjct: 275 NCKFSSNGPKIKQAKKKQ 292


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 432 KARMARTEDTVQGTDRTAHRDHMDIRN*DSPLSSRPSS 319
           +A M+++ED +Q    T      D+ N +SP S   +S
Sbjct: 64  RAMMSKSEDNLQILKETTSGSSSDLLNIESPASPAEAS 101


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 65  KTIQNFQVTNRRVNKINVNNGFSSEEGCFDEKC 163
           +T+QN Q       K+NVN  F +    F E C
Sbjct: 614 QTVQNLQEYLNEKRKLNVNFQFQTPLLIFPEDC 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,297,340
Number of Sequences: 5004
Number of extensions: 20708
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)