Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h19
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   189   3e-49
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   116   3e-27
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   111   6e-26
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   104   9e-24
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    26   3.0  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   4.0  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   4.0  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   4.0  
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    25   9.3  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   9.3  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  189 bits (460), Expect = 3e-49
 Identities = 78/121 (64%), Positives = 98/121 (80%)
 Frame = +3

Query: 168 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDLQLERINVYYNEASAGKYV 347
           MREI+++Q G CGNQ+G  FW  I+DEHG+D +G YHG S+ Q ER+NVY+NEA+ GKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 348 PRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKGHYTEGVEILESALDVI 527
           PR VL+DL+P TMDAV+SG FG LFRPDN +YGQ+ A N WAKGHYTEG E+ ++ LDV+
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120

Query: 528 R 530
           R
Sbjct: 121 R 121


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  116 bits (278), Expect = 3e-27
 Identities = 52/123 (42%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
 Frame = +3

Query: 168 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDLQLER--INVYYNEASAGK 341
           MREII++ VG  G QIG   WE+   EHGI P+G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 342 YVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKGHYTEGVEILESALD 521
           YVPR++ +DL+P  +D VR+GP+  LF P+  + G+  A+NN+A+GHYT G E+++   D
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120

Query: 522 VIR 530
            IR
Sbjct: 121 KIR 123


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  111 bits (267), Expect = 6e-26
 Identities = 52/127 (40%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
 Frame = +3

Query: 168 MREIINLQVGSCGNQIGGKFWEVISDEHGIDPSGC------YHGDSDLQLERINVYYNEA 329
           MRE+I++ VG  G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 330 SAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQNCAANNWAKGHYTEGVEILE 509
             GK+VPR++ +DL+P  +D VR+GP+  LF P+  V G+  A+NN+A+GHYT G E+++
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120

Query: 510 SALDVIR 530
           S L+ IR
Sbjct: 121 SVLERIR 127


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  104 bits (249), Expect = 9e-24
 Identities = 48/121 (39%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
 Frame = +3

Query: 171 REIINLQVGSCGNQIGGKFWEVISDEHGIDPSGCYHGDSDLQLERINVYYNEASAGKYVP 350
           REII LQ G CGNQIG +FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 351 RTVLIDLKPATMDAVRSGPFGCLFRPDNFVYGQN--CAANNWAKGHYTEGVEILESALDV 524
           R +LIDL+P  ++ + S  +G L+ P+N +  +N   A NNWA G Y+    I E  +D+
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121

Query: 525 I 527
           I
Sbjct: 122 I 122


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 278 RRLRPATRKDQRVLQRGIGWEICSSHGSYRLEAGHDGRGEVG-TLRMPIQT 427
           R+ +P +R+D R+  + +G E C  H         D  G++   L++P +T
Sbjct: 219 RKNQPRSRRDPRLSWKALGGEYCHFHLYKENRDSMDCLGKIARLLKVPTRT 269


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 400 RDPSDAYSDRTISSTDKTVRPTTGRRD 480
           + P + +SD+TI S   T+ PT   ++
Sbjct: 702 KTPMNLFSDQTIGSITNTIEPTAAAKN 728


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 244 TSTASIQADATTATPTCN---SKGSTCTTT 324
           TST S+   +TTAT +C    S  ST TTT
Sbjct: 757 TSTGSVTTTSTTATASCTLPISYTSTPTTT 786


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 278 RRLRPATR-KDQRVLQRGIGWEICSSHGSYRLEAGHDGRGEVGTLR 412
           R  RP  + KD  + Q+GI     S  G+Y L  G D    V  LR
Sbjct: 283 RTKRPVMKIKDAHLPQQGISCLSFSQDGNYLLSRGEDNALRVWDLR 328


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 326 LVVVHVDPFELQVGVAVVASAWIDAVLVRYHLPELSADLVSTRTDLE 186
           +  +  D  EL      V+SAW+      Y L  +SAD++    D E
Sbjct: 1   MTAICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDDE 47


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 402 GPFGCLFRPDNFVYGQN 452
           GP+G +F P  F++  N
Sbjct: 157 GPYGTMFLPQQFIFDSN 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,780
Number of Sequences: 5004
Number of extensions: 41449
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)