Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h19
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   1.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   7.9  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 305 DQRVLQRGIGWEI-CSSHGSYRLEAGHDGRGEVGTLRMPIQTGQFRLRTKLCGQQLG 472
           DQ++    I ++I C   G   +  G +  GEV   +M  Q    +  ++ CG+ +G
Sbjct: 101 DQKIEINFITFDIPCEHRGLVSIIDGWELNGEVFPSKMDHQLPLKQRSSEFCGKNIG 157


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 260 IDAVLVRYHLPELSADLVSTRTDLEIDNFPHLVNL 156
           IDA+   +    L  +  + RTDL  D++  LV+L
Sbjct: 222 IDAINHMFEDARLLDEPSANRTDLSKDDYESLVHL 256


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 241 LTSTASIQADATTATPTCNSKGSTCTTTRHRLGN 342
           L ST S+       TP+  S  STC   +   G+
Sbjct: 556 LKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGS 589


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 213 FGFHKNRPGD 184
           + +HK+RPGD
Sbjct: 56  YTYHKSRPGD 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,638
Number of Sequences: 438
Number of extensions: 2846
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)