Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h18
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    31   0.11 
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    26   4.2  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    25   9.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.7  
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.7  

>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 374 QPGGVFHWELLKLRKLPVDCISHRSGSEHSSNLHGRNTHWGRKLNHARL 520
           Q G  +H + LK R L +  ++H SG+ HS +LHG      + +   R+
Sbjct: 280 QLGREYHEKALKYRSLAMRSLAH-SGTSHSLDLHGATVREAKTIVRERV 327


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 386 VFHWEL---LKLRKLPVDCISHRSGSEHSSNLHGRNTHWGRKLNH 511
           VFH  +   L + + P D   + + +E  + L   + HWG+++ H
Sbjct: 88  VFHAHIPNFLSVEQTPYDPEQYAAEAEADAALLEHDAHWGQRIKH 132


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 477 PCRFELCSLPDLWLMQSTGSFLSLSNSQ 394
           P    + SL  +  +++TGSFL+ SNS+
Sbjct: 101 PHEVRVSSLARVQTLETTGSFLNSSNSE 128


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 85  FCSKILKCIEFIH 47
           FC  I KCIE++H
Sbjct: 128 FCIAICKCIEYLH 140


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 429 IALAIDPEASIVQIYMVATLIGAGSSI 509
           I LAID   S V    +A  +G GSSI
Sbjct: 117 ITLAIDKRISHVSYLFLAPYLGLGSSI 143


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 195 YVF--SRLYWALSLVYVPLFLEERLSVNPS 278
           YVF  +  +W + L+YV L L E L V+ S
Sbjct: 314 YVFYITSTFWIIYLLYVWLILPESLDVSES 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,671
Number of Sequences: 5004
Number of extensions: 44846
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)