Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h18
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624...    30   1.4  
03_01_0537 + 4029790-4029827,4030048-4030171,4030491-4030754,403...    29   3.2  
08_02_0530 + 18244933-18245217,18245309-18245383,18246176-182462...    28   4.3  
01_01_1017 - 8036894-8036907,8037478-8038690                           27   7.5  
01_01_1016 - 8031876-8032008,8032129-8032253,8032659-8032728,803...    27   7.5  
11_06_0550 + 24879074-24881290                                         27   9.9  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    27   9.9  

>01_01_0802 +
           6246267-6247541,6247625-6247682,6247806-6248129,
           6248321-6248355
          Length = 563

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 345 VARKRTMKCKAQEVHSQLALILHSGSQINV 256
           + R++ M+ + Q VH Q+AL+LHS  + N+
Sbjct: 520 IYREKHMQIQTQIVHQQMALMLHSHPERNI 549


>03_01_0537 +
           4029790-4029827,4030048-4030171,4030491-4030754,
           4030847-4030978,4031068-4031184,4031687-4031963,
           4037100-4037137
          Length = 329

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -1

Query: 262 KRSSKNNGTYTRLNAQYRRENT----YPPKNNRLRKK 164
           ++  + NG  TR NA  RR +     YPPK N+ +KK
Sbjct: 280 EKELQKNGQPTRTNAAKRRADAQILLYPPKPNKSKKK 316


>08_02_0530 +
           18244933-18245217,18245309-18245383,18246176-18246292,
           18246503-18246631,18246726-18246785,18247271-18247441,
           18247596-18247689,18247860-18247951,18248071-18248220,
           18248407-18248465,18249735-18249864
          Length = 453

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 194 ICIFSSVLGIESCVRAIVLGGTFICEPEC 280
           I I S      SC R ++LG   IC P+C
Sbjct: 158 IYILSDFRCSPSCTRGVILGSEPICPPDC 186


>01_01_1017 - 8036894-8036907,8037478-8038690
          Length = 408

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 280 ALGFTDKRSSKNNGTYTRLNAQYRRENTYPPKNNRLR 170
           ALGF    S  N+G Y   +A  R    YPP ++  R
Sbjct: 98  ALGFDPAPSCANDGGYILCHATLRMAYLYPPCSDEYR 134


>01_01_1016 -
           8031876-8032008,8032129-8032253,8032659-8032728,
           8032815-8034022
          Length = 511

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 280 ALGFTDKRSSKNNGTYTRLNAQYRRENTYPPKNNRLR 170
           ALGF    S  N+G Y   +A  R    YPP ++  R
Sbjct: 98  ALGFDPAPSCTNDGGYILCHATLRMAYLYPPCSDEYR 134


>11_06_0550 + 24879074-24881290
          Length = 738

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 392 HWELLKLRKLPVDCISHRSGSEHSSNLHGRN 484
           H  LLKL++L   CI   S S   +N+  RN
Sbjct: 213 HILLLKLKRLLAGCIDSNSSSNAKNNISFRN 243


>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
            24779422-24780354,24780456-24780938,24780969-24781082,
            24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 392  HWELLKLRKLPVDCISHRSGSEHSSNLHGRN 484
            H  LLKL++L   CI   S S   +N+  RN
Sbjct: 1390 HILLLKLKRLLAGCIDSNSSSNAKNNISFRN 1420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,134
Number of Sequences: 37544
Number of extensions: 281745
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)