Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12h18
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC068439-1|AAH68439.1| 480|Homo sapiens chromosome 19 open read... 50 5e-06
BC036706-1|AAH36706.1| 471|Homo sapiens C19orf28 protein protein. 50 5e-06
BX641095-1|CAE46045.1| 1374|Homo sapiens hypothetical protein pr... 29 8.1
AY788891-1|AAX14639.1| 1428|Homo sapiens CD109 protein. 29 8.1
AY149920-1|AAN78483.1| 1445|Homo sapiens activated T-cell marker... 29 8.1
AL834478-1|CAD39137.1| 854|Homo sapiens hypothetical protein pr... 29 8.1
AL591480-1|CAI15122.1| 1445|Homo sapiens RP11-525G3.1 protein. 29 8.1
AL590428-2|CAI15636.1| 1445|Homo sapiens RP11-525G3.1 protein. 29 8.1
AF410459-1|AAL84159.1| 1445|Homo sapiens CD109 protein. 29 8.1
>BC068439-1|AAH68439.1| 480|Homo sapiens chromosome 19 open reading
frame 28 protein.
Length = 480
Score = 50.0 bits (114), Expect = 5e-06
Identities = 35/118 (29%), Positives = 53/118 (44%)
Frame = +3
Query: 195 YVFSRLYWALSLVYVPLFLEERLSVNPSAGSELVASVPXXXXXXXXXXXXXXXXXXXXXG 374
Y+ +RL LS Y+ ++L L + + +A++P G
Sbjct: 284 YMTTRLIVNLSQTYMAMYLTYSLHLP----KKFIATIPLVMYLSGFLSSFLMKPINKCIG 339
Query: 375 NQVVYFIGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADXI 548
+ YF G + L W+ALA E V +Y A L+GAG + LV+SL +TAD I
Sbjct: 340 RNMTYFSGLLVILAFAAWVALA---EGLGVAVYAAAVLLGAGCATILVTSLAMTADLI 394
>BC036706-1|AAH36706.1| 471|Homo sapiens C19orf28 protein protein.
Length = 471
Score = 50.0 bits (114), Expect = 5e-06
Identities = 35/118 (29%), Positives = 53/118 (44%)
Frame = +3
Query: 195 YVFSRLYWALSLVYVPLFLEERLSVNPSAGSELVASVPXXXXXXXXXXXXXXXXXXXXXG 374
Y+ +RL LS Y+ ++L L + + +A++P G
Sbjct: 275 YMTTRLIVNLSQTYMAMYLTYSLHLP----KKFIATIPLVMYLSGFLSSFLMKPINKCIG 330
Query: 375 NQVVYFIGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADXI 548
+ YF G + L W+ALA E V +Y A L+GAG + LV+SL +TAD I
Sbjct: 331 RNMTYFSGLLVILAFAAWVALA---EGLGVAVYAAAVLLGAGCATILVTSLAMTADLI 385
>BX641095-1|CAE46045.1| 1374|Homo sapiens hypothetical protein
protein.
Length = 1374
Score = 29.5 bits (63), Expect = 8.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 317 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 427
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 939 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 975
>AY788891-1|AAX14639.1| 1428|Homo sapiens CD109 protein.
Length = 1428
Score = 29.5 bits (63), Expect = 8.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 317 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 427
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 1010 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 1046
>AY149920-1|AAN78483.1| 1445|Homo sapiens activated T-cell marker
CD109 protein.
Length = 1445
Score = 29.5 bits (63), Expect = 8.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 317 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 427
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 1010 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 1046
>AL834478-1|CAD39137.1| 854|Homo sapiens hypothetical protein
protein.
Length = 854
Score = 29.5 bits (63), Expect = 8.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 317 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 427
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 419 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 455
>AL591480-1|CAI15122.1| 1445|Homo sapiens RP11-525G3.1 protein.
Length = 1445
Score = 29.5 bits (63), Expect = 8.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 317 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 427
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 1010 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 1046
>AL590428-2|CAI15636.1| 1445|Homo sapiens RP11-525G3.1 protein.
Length = 1445
Score = 29.5 bits (63), Expect = 8.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 317 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 427
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 1010 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 1046
>AF410459-1|AAL84159.1| 1445|Homo sapiens CD109 protein.
Length = 1445
Score = 29.5 bits (63), Expect = 8.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 317 LHFIVLFLATTQEQD*QFWQPGGVFHWELLKLRKLPV 427
LH +L Q+ + +FW PG V H EL K PV
Sbjct: 1010 LHRTYTWLKGHQKSNGEFWDPGRVIHSELQGGNKSPV 1046
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,102,706
Number of Sequences: 237096
Number of extensions: 1712358
Number of successful extensions: 3007
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3005
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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