Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h18
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical pr...    33   0.10 
U13876-11|AAN63395.1|  201|Caenorhabditis elegans Coenzyme q (ub...    27   6.7  
U13876-10|AAN63394.1|  216|Caenorhabditis elegans Coenzyme q (ub...    27   6.7  
U13876-9|AAW88395.1|  356|Caenorhabditis elegans Coenzyme q (ubi...    27   6.7  
U13876-8|AAN63396.1|  370|Caenorhabditis elegans Coenzyme q (ubi...    27   6.7  
U13876-7|AAW88396.1|  427|Caenorhabditis elegans Coenzyme q (ubi...    27   6.7  
AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine r...    27   8.9  

>U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical
           protein F16H11.1 protein.
          Length = 501

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
 Frame = +3

Query: 195 YVFSRLYWALSLVYVPLFLEERLSVNPSAGSELVASVPXXXXXXXXXXXXXXXXXXXXX- 371
           Y+ SRLY  +S VY P ++    ++  +   + VA +P                      
Sbjct: 288 YMLSRLYINISQVYFPFYI----TMTQNYEKKYVAILPMVAYLSSFSVSMVNSLPVVSKL 343

Query: 372 GNQVVYFIGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADXI 548
             +++Y  G    + SC  + L +       +IY +A  IG   +I L++SL +TAD I
Sbjct: 344 SKKILYSFGLASGMLSCAVMMLDLPGW----KIYALAVGIGIAQAILLITSLSITADLI 398


>U13876-11|AAN63395.1|  201|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform d protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 393 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTAD 542
           IG+ L    C W      P   +  IYM+ +L GAG+ + + S+ CV  D
Sbjct: 75  IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVIND 122


>U13876-10|AAN63394.1|  216|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform c protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 393 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTAD 542
           IG+ L    C W      P   +  IYM+ +L GAG+ + + S+ CV  D
Sbjct: 75  IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVIND 122


>U13876-9|AAW88395.1|  356|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform a protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 393 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTAD 542
           IG+ L    C W      P   +  IYM+ +L GAG+ + + S+ CV  D
Sbjct: 75  IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVIND 122


>U13876-8|AAN63396.1|  370|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform e protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 393 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTAD 542
           IG+ L    C W      P   +  IYM+ +L GAG+ + + S+ CV  D
Sbjct: 75  IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVIND 122


>U13876-7|AAW88396.1|  427|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform b protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 393 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTAD 542
           IG+ L    C W      P   +  IYM+ +L GAG+ + + S+ CV  D
Sbjct: 75  IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVIND 122


>AC006769-16|AAF60588.2|  338|Caenorhabditis elegans Serpentine
           receptor, class j protein20 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 307 GTLATSSDPALGFTDKRSSKNNGTYTRLNAQY 212
           G  A SS+PA  F   R+S  +GTY  LN  +
Sbjct: 79  GPFALSSEPAEAFIAFRASFLSGTYGILNVHF 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,471
Number of Sequences: 27780
Number of extensions: 264988
Number of successful extensions: 747
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)