Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h18
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    33   0.001
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   1.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   1.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   6.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.2  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 34  MSKYNE*IRYILKFYYKKDKLTTQDVKKNCDVYG 135
           M    E  R+IL FY++K K  +Q  KK C VYG
Sbjct: 1   MENQKEHYRHILLFYFRKGKNASQAHKKLCAVYG 34


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 4   FFLFIFRTVKMSKYNE*IRYILKFYYKKDKLTTQDVKKNCDV 129
           +FL    T+   K+ E  R I  +Y++ +K+    +K   DV
Sbjct: 370 YFLDYNYTIPKEKHVEVARLIRNYYFESNKIDETTLKHLIDV 411


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 4   FFLFIFRTVKMSKYNE*IRYILKFYYKKDKLTTQDVKKNCDV 129
           +FL    T+   K+ E  R I  +Y++ +K+    +K   DV
Sbjct: 370 YFLDYNYTIPKEKHVEVARLIRNYYFESNKIDETTLKHLIDV 411


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -1

Query: 256 SSKNNGTYTRLNAQYRRENTYPPKNNRLRKKL 161
           S  N   +   N +Y   N Y   NN   KKL
Sbjct: 84  SLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKL 115


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +3

Query: 372 GNQVVYFIGSCLSLGSCLWIALAIDPEASIVQIYMVATLI 491
           GN ++   G C+ L    W++  ++ EA+  ++ +  T +
Sbjct: 214 GNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTV 253


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 31  KMSKYNE*IRYILKFYYKKDKLTTQDVKKNCDVY 132
           K S YN    Y  K YYK   +  + +     +Y
Sbjct: 90  KYSNYNNYNNYNKKLYYKNYIINIEQIPVPVPIY 123


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 166 KLLSQTLHL*VHKHRNFFSRLAW*VYLFCSKILKCIEFIH 47
           K LS  L L  HK +  F  L   V   C K+ + +  ++
Sbjct: 379 KTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRTLNSLN 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,662
Number of Sequences: 438
Number of extensions: 3608
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)