Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h16
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z83116-10|CAB05564.2|  311|Caenorhabditis elegans Hypothetical p...    26   6.0  
Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical p...    26   6.0  
Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical pr...    25   7.9  
AF125954-1|AAK68174.1|  340|Caenorhabditis elegans Serpentine re...    25   7.9  
AC024831-5|AAK72076.1|  186|Caenorhabditis elegans Hypothetical ...    25   7.9  
AC006769-2|AAF60583.2|  340|Caenorhabditis elegans Hypothetical ...    25   7.9  

>Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical
           protein C38C6.4 protein.
          Length = 359

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 124 QLLHYNYIADSFNTFTPLYNFYLYIFY 44
           Q ++  Y   +++     YN+YL++FY
Sbjct: 12  QTMYIKYFNKTYSIIEGSYNYYLFVFY 38


>Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical
           protein T02D1.3 protein.
          Length = 322

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 86  HFYTIIQFLSLYFL*NYYMFFMPCL 12
           HF  II F S+YF  NY  F  P L
Sbjct: 108 HFLKIIFFFSIYF--NYTAFLFPLL 130


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 145 MRGYLKTQLLHYNYIADSFNTF 80
           ++ YLK QL HYN+I  S   F
Sbjct: 51  LKVYLKIQLFHYNFIILSIPMF 72


>Z83116-10|CAB05564.2|  311|Caenorhabditis elegans Hypothetical
           protein M01B2.9 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 53  IKIKIV*WCKSVKAICNIII 112
           I + +  +CK++++ICNI+I
Sbjct: 25  IMVMVTFYCKNLRSICNILI 44


>Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical
           protein T26E4.14 protein.
          Length = 308

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 53  IKIKIV*WCKSVKAICNIII 112
           I + +  +CK++++ICNI+I
Sbjct: 25  IMVMVTFYCKNLRSICNILI 44


>Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical
           protein R05A10.7 protein.
          Length = 304

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 115 HYNYIADSFNTFTPLYNFYLYIFY 44
           H+N+  DSF++    Y  + YI Y
Sbjct: 71  HFNFSMDSFHSIRKYYPNHTYILY 94


>AF125954-1|AAK68174.1|  340|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 60 protein.
          Length = 340

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 163 IGFFRLMRGYLKTQLLHYNYIADSFNTFTPLYNFYLYIFY 44
           +GFF +   Y+ TQ+L   Y      T   L++  L I++
Sbjct: 251 VGFFYIFNKYVGTQILISQYTVCFMITLPALFDPILQIYF 290


>AC024831-5|AAK72076.1|  186|Caenorhabditis elegans Hypothetical
           protein Y55F3C.5 protein.
          Length = 186

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 67  CIMV*KC*SYLQYNYNEAVVFLNSPSST*RTQSSNLTVQQ 186
           C     C ++ +  YN A+VF+N+ S+     ++ L  ++
Sbjct: 23  CTKAPNCLAFTESQYNIAIVFMNNTSNECSANTTELLTEK 62


>AC006769-2|AAF60583.2|  340|Caenorhabditis elegans Hypothetical
           protein Y45G12C.7 protein.
          Length = 340

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 163 IGFFRLMRGYLKTQLLHYNYIADSFNTFTPLYNFYLYIFY 44
           +GFF +   Y+ TQ+L   Y      T   L++  L I++
Sbjct: 251 VGFFYIFNKYVGTQILISQYTVCFMITLPALFDPILQIYF 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,931,593
Number of Sequences: 27780
Number of extensions: 110630
Number of successful extensions: 235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)