Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h13
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   1.9  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    25   3.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   4.4  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    24   4.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    24   4.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   5.8  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    23   7.7  

>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 136 WLSKY*NLNNSVLILLRID*YQNVKSPLSVTKFT 35
           W  +  ++N S   ++++D Y N+KS LS  K T
Sbjct: 386 WNWELGSVNESEYTVVKVDFYNNIKSYLSEVKNT 419


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 100 EQSYLNFSIWRAKIKAGVLNLNYIRNDD 183
           E S  +FS+   K +   L LN ++NDD
Sbjct: 305 ESSSSHFSVVAMKRRKNYLGLNVVQNDD 332


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 254 LVAQTTNLYNKGTLETVDKQQTCLSSLRM 168
           + +     +N G  ETVD+Q   LS L++
Sbjct: 70  MTSDGVEFHNLGITETVDEQDKILSELQL 98


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 100 LILLRID*YQNVKSPLSVTKFTILNF 23
           L L+R++   +   PL  T FTI+NF
Sbjct: 376 LRLIRVEYDPSTGRPLRCTNFTIINF 401


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 121 SIWRAKIKAGVLNLNYI 171
           ++W  K+K  VLNL+Y+
Sbjct: 188 TVWDVKLKRQVLNLSYL 204


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 76   INRYAIKLEQSYLNF 120
            +N   ++LEQSYLNF
Sbjct: 3814 VNGKTLELEQSYLNF 3828


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 227 NKGTLETVDKQQTCLSSL 174
           +K  LE +DK QT LSS+
Sbjct: 486 SKNLLELLDKHQTALSSV 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,159,542
Number of Sequences: 5004
Number of extensions: 18962
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)