Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h13
         (307 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042...    34   0.019
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913...    28   1.3  
11_01_0772 - 6455042-6458107                                           26   6.7  
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460...    26   6.7  
03_03_0165 + 14982725-14984128                                         25   8.9  

>02_03_0201 +
           16302797-16302799,16303949-16304084,16304163-16304250,
           16305531-16305683,16306647-16306809,16306906-16307090,
           16307164-16307337,16308055-16308200,16308369-16308492,
           16308608-16308788,16309302-16309371,16310155-16310196,
           16310276-16310394,16310474-16310672,16311442-16311573,
           16312435-16312538,16312641-16312820,16314000-16314090,
           16314100-16314139,16314225-16314364,16314500-16314660,
           16314897-16315020,16315104-16315255
          Length = 968

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 118 FSIWRAKIKAGVLNLNYIRNDDKHVCCLSTVSNVPL 225
           F+IW  ++K   +  N+ R  DK VCCL   S + L
Sbjct: 759 FNIWFEQVKKSGVRANFKREHDKKVCCLGLTSLISL 794


>04_03_0434 +
           15889712-15889797,15890086-15890287,15891184-15891323,
           15891420-15891559,15891762-15891913,15892773-15892902,
           15892990-15893141
          Length = 333

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 118 FSIWRA---KIKAGVLNLNYIRNDDKHVCCLSTVSNVPL 225
           F++W     ++K   +  N+ R  DK VCCL   S + L
Sbjct: 122 FNLWFGMLQQVKKSGIRANFKREHDKKVCCLGLTSLISL 160


>11_01_0772 - 6455042-6458107
          Length = 1021

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 199 LSTVSNVPLLYKFVVCATSTE 261
           L+++S +PLLY  ++CA+  E
Sbjct: 824 LASLSKMPLLYSLLLCASDEE 844


>02_01_0614 -
           4599035-4599083,4599209-4599303,4599410-4599494,
           4600107-4600196,4600772-4600879,4600983-4601197
          Length = 213

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 175 NDDKHVCCLSTVSNVPLLYKFVVCATSTEGMC*GTTSMVRES 300
           ND+  +C +  +    L   FVV  T++E +     SM + S
Sbjct: 124 NDEPFICTMDCIGAKELAKDFVVSGTASESLYGACESMYKPS 165


>03_03_0165 + 14982725-14984128
          Length = 467

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 130 RAKIKAGVL-NLNYIRNDDKHVCCL 201
           RAK++ G L   N   NDD H C L
Sbjct: 236 RAKMELGCLVRANIAANDDAHACAL 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,989,302
Number of Sequences: 37544
Number of extensions: 105432
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)