Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h13
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92785-4|CAB07201.2|  352|Caenorhabditis elegans Hypothetical pr...    26   4.5  
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    26   6.0  

>Z92785-4|CAB07201.2|  352|Caenorhabditis elegans Hypothetical
           protein F31E9.3 protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 112 LNFSIWRAKIKAGVLNLNYIRNDDKHVCCLSTVSNV 219
           L F +   K +  VL+++     D H CC  T++N+
Sbjct: 141 LAFFLKNPKTRLEVLSIHLSAPTDSHDCCSETITNL 176


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 123 YLESQNQSWSVELKLHSQR*QTRLLFVYCL*RSFVVQICRLRDKYRR 263
           YL+  ++   + +K HSQR  T LLF   L R+ +++   L  KY +
Sbjct: 108 YLDVYSEKVLLVVKDHSQRSSTWLLFSIALIRTLIIR-NPLNPKYEK 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,464,012
Number of Sequences: 27780
Number of extensions: 107755
Number of successful extensions: 229
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)