Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h13
         (307 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   2.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   3.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   4.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   6.0  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               20   7.9  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 263 PSVLVAQTTNLYNKGTLETVDKQQTCLSSLRM*FKFNTPALI 138
           PS+    TT+  ++ T++T+  Q +   +  M ++   PALI
Sbjct: 393 PSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALI 434


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 70  FDINRYAIKLEQSYLN 117
           F  N YA+K+ ++Y+N
Sbjct: 536 FAQNLYAMKMNETYIN 551


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 211 SNVPLLYKFVVCATST 258
           SNVP  +KF+  A S+
Sbjct: 315 SNVPFNFKFITDANSS 330


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/36 (19%), Positives = 19/36 (52%)
 Frame = +1

Query: 112 LNFSIWRAKIKAGVLNLNYIRNDDKHVCCLSTVSNV 219
           ++ S +   ++  +L +   RN++ + CC    S++
Sbjct: 204 IDLSDFYLSVEWDILEVPASRNEEYYPCCTEPYSDI 239


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 87  VSIDIKMLSHRCQSLN 40
           +SID+KMLS  C + N
Sbjct: 108 ISIDVKMLS-ECINAN 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,472
Number of Sequences: 438
Number of extensions: 1295
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)