Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h10
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    29   0.52 
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   3.6  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   8.4  

>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = +3

Query: 372 KGVWENDRLGANDEVIIHFSDDARYEGQLKDWSFWGP------GKYYYPDGSVVRCDFND 533
           K  ++N R       +     +AR   QLK + F  P      GK YYP G +    FND
Sbjct: 132 KNFYQNHRRYTVSADMFQLLGEARTVAQLKSYGFCKPLEANEEGKPYYPCGIIANSLFND 191

Query: 534 N 536
           +
Sbjct: 192 S 192


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 57  KFYFLDCYYINTF 19
           KF+FL+C+Y+N +
Sbjct: 140 KFFFLECFYLNLY 152


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 481 LESITIRMEVLFVVILTTTVQLGIWY 558
           LES  + + VL++V+   TV + +WY
Sbjct: 668 LESYGLNIRVLYMVLGIVTVGILVWY 693


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,061
Number of Sequences: 5004
Number of extensions: 49545
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)