Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12h10
(598 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 1.7
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 23 2.3
DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor pro... 22 4.0
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 22 5.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.9
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 9.2
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 9.2
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 9.2
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 1.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 476 PETPIFQLTFVPRVIRKMYYYFIVCS*TIVLPNALVA 366
PE P +TFV + R+ YYF +++P L+A
Sbjct: 215 PE-PYIDITFVVIIRRRTLYYFF----NLIVPCVLIA 246
Score = 21.0 bits (42), Expect = 9.2
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -3
Query: 299 FKVSVVSVTSIVFEKTLILNYRH 231
F + V S V LILNY H
Sbjct: 298 FNCIMFMVASSVVSTILILNYHH 320
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 23.0 bits (47), Expect = 2.3
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = -3
Query: 464 IFQLTFVPRVIRKMYYYFIVCS*TIVLPNALVAVPFSRNVHSWSMHLNTSIFLFRFKVSV 285
IF ++ +I +YYY + S + AL NV S + NTS +++
Sbjct: 215 IFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNANTSSQSAEIRIAK 274
Query: 284 VSVT 273
++T
Sbjct: 275 AAIT 278
>DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor
protein.
Length = 405
Score = 22.2 bits (45), Expect = 4.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 563 T*YHIPNWTVVVKITTNNTSIRIVILSRT 477
T Y++PNWT +V I + I+ T
Sbjct: 28 TEYYLPNWTDLVLAGLFTMLIIVTIVGNT 56
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/41 (26%), Positives = 16/41 (39%)
Frame = +3
Query: 291 YFEAKKKDRSVKMHGPGVYITAEGDSYKGVWENDRLGANDE 413
Y KD + +T GD + +W D AND+
Sbjct: 87 YLNQYWKDERLAFSQEEEVLTLSGDFAEKIWVPDTFFANDK 127
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 476 PETPIFQLTFVPRVIRKMYYYFIVCS*TIVLPNALVAVPFS 354
PE P +TF ++ R+ YYF VL +++ + F+
Sbjct: 178 PE-PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFT 217
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 476 PETPIFQLTFVPRVIRKMYYYFIVCS*TIVLPNALVAVPFS 354
PE P +TF ++ R+ YYF VL +++ + F+
Sbjct: 178 PE-PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFT 217
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 476 PETPIFQLTFVPRVIRKMYYYFIVCS*TIVLPNALVAVPFS 354
PE P +TF ++ R+ YYF VL +++ + F+
Sbjct: 178 PE-PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFT 217
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 476 PETPIFQLTFVPRVIRKMYYYFIVCS*TIVLPNALVAVPFS 354
PE P +TF ++ R+ YYF VL +++ + F+
Sbjct: 178 PE-PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFT 217
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 476 PETPIFQLTFVPRVIRKMYYYFIVCS*TIVLPNALVAVPFS 354
PE P +TF ++ R+ YYF VL +++ + F+
Sbjct: 178 PE-PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFT 217
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 476 PETPIFQLTFVPRVIRKMYYYFIVCS*TIVLPNALVAVPFS 354
PE P +TF ++ R+ YYF VL +++ + F+
Sbjct: 178 PE-PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFT 217
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 476 PETPIFQLTFVPRVIRKMYYYFIVCS*TIVLPNALVAVPFS 354
PE P +TF ++ R+ YYF VL +++ + F+
Sbjct: 246 PE-PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFT 285
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 6.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 476 PETPIFQLTFVPRVIRKMYYYFIVCS*TIVLPNALVAVPFS 354
PE P +TF ++ R+ YYF VL +++ + F+
Sbjct: 246 PE-PYVDVTFTIQIRRRTLYYFFNLIVPCVLISSMALLGFT 285
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 486 KYYYPDGSVVRCDFN 530
+Y+ PDGS V D N
Sbjct: 283 RYFCPDGSKVPIDAN 297
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 486 KYYYPDGSVVRCDFN 530
+Y+ PDGS V D N
Sbjct: 283 RYFCPDGSKVPIDAN 297
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 486 KYYYPDGSVVRCDFN 530
+Y+ PDGS V D N
Sbjct: 283 RYFCPDGSKVPIDAN 297
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,178
Number of Sequences: 438
Number of extensions: 3622
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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