Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12h09
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44...    31   0.37 
02_03_0286 + 17317316-17317516,17317610-17318245                       30   0.85 
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459     29   2.0  
04_01_0356 + 4663723-4664253                                           29   2.6  
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498...    28   4.5  
11_06_0714 + 26537196-26537248,26537391-26537725,26540032-265401...    27   7.9  
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    27   7.9  

>08_01_0064 +
           444888-444959,445073-445277,445736-445901,446029-446251,
           446982-447058,447370-447557,447845-447942,448202-448335,
           448421-448555,448832-448960,449263-449632,449897-450018,
           450155-450274,450396-450626,450706-450894,450978-451089,
           451193-451438
          Length = 938

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 186 RESMTAVYRIYEEFCNETTLHGLKHTVEKSLHWFE 82
           ++  +  Y+ Y EFC  + +  L+H  EK +H+ E
Sbjct: 842 QDENSGAYKHYSEFCQGSVMDPLEHDPEKEMHYAE 876


>02_03_0286 + 17317316-17317516,17317610-17318245
          Length = 278

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 458 CSRDTASVASCRDARASALAPCSDGRWI--SIVNENRI 351
           C R T    +C    A AL+PC+  RW+  SI N  R+
Sbjct: 3   CKRPTPDGDACSATAAVALSPCNKPRWLFMSIFNYKRM 40


>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
          Length = 867

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 309 KTIGELHGNLGLDLDPILVHDRDPTTITTRCQSRSXGVAAGSHRGGVPTAV 461
           + IG LH  + LDLD   ++   PTTI      +S  ++     G +P ++
Sbjct: 225 REIGMLHSLVALDLDHNNINGSIPTTIGNLTSLKSLDLSTNEITGFIPESI 275


>04_01_0356 + 4663723-4664253
          Length = 176

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 62  QYYYFYLSNQCKLFSTVCLRPCKVVSLQNSSYILYTAVM 178
           +YY FY  N     S+VC+    +V L  + Y+ +T+VM
Sbjct: 67  RYYVFYYCNATSFASSVCI----IVLLATNFYLSHTSVM 101


>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
            25450299-25450628,25451090-25451362,25451471-25451929,
            25452307-25452516,25452617-25452828,25453304-25453404,
            25453584-25454008,25454167-25454360,25454436-25454701,
            25454809-25455015,25455121-25455281,25455741-25455933,
            25456158-25456251,25457238-25457373,25458074-25458202,
            25458315-25458449,25458549-25458613,25459875-25459950,
            25460775-25460885,25461194-25461371,25462340-25462434
          Length = 1557

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 170  LCTEYTRNSAMKRPYTASNILSRRACIGLRGKNNNIE 60
            +CT   RNS   R + A   LS+    G + +N ++E
Sbjct: 1326 ICTAANRNSKAARKFAAQETLSKLKNYGYKHRNKSLE 1362


>11_06_0714 +
           26537196-26537248,26537391-26537725,26540032-26540104,
           26540442-26540790,26542766-26543248,26544899-26545027,
           26545116-26545244
          Length = 516

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 235 GGNSAVCNVPRLSILGSDVQMRRGG 309
           G N+ + +VP+LS+LG ++   RGG
Sbjct: 87  GINANLVSVPQLSLLGLNISFDRGG 111


>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
            282768-282923,283224-283349,283426-283560,283815-283942,
            284037-284148,284233-284547,284655-284771,284871-285166,
            285252-285783,287980-288082,288808-288881,288965-289062,
            289340-289380,289977-290032,290170-290244,290377-290469,
            290602-290850,290930-291002,291681-291766,291853-291938,
            292067-292142,292280-292347,292430-292496,292570-292665,
            292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 150  PRIFCTQPSWTPSPRASRTSYAS 218
            P++  T+PS TP P+A +T  AS
Sbjct: 1732 PKVKETEPSRTPEPKAPKTEEAS 1754


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,196,765
Number of Sequences: 37544
Number of extensions: 231984
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)